CK739507

Overview
NameCK739507
Unique NameCK739507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length297
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_NITMS (50S ribosomal protein L14P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.000e-12
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAK L +I+V   + R +RLPSA VGD     VKKG  +L K V  AVI+RQ+ P RR +GV + FEDNA V++
Sbjct:   33 GAKILEVINVPRHRTRASRLPSASVGDFCNVVVKKGPAELRKQVYGAVIIRQKYPVRRLNGVRVCFEDNAAVLI 106          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_METB6 (50S ribosomal protein L14P OS=Methanoregula boonei (strain 6A8) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.912e-12
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   37 ASGSNL*TVLTTPGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            A+G+ L T     GA+ + I+SV G  G   R P   +GD+   TVKKG PD+ K ++ AV++RQ+K  RR +G+ + F+DNA V+V
Sbjct:   13 ATGTKL-TCADNTGARIVQIVSVFGYHGVRRRQPKMGLGDIATVTVKKGTPDMRKKLVRAVVIRQKKEMRRPNGLRVSFDDNAVVVV 98          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_METLZ (50S ribosomal protein L14P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.593e-11
Identity = 32/74 (43.24%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GA+ + I+SV G  G  NR P   +GD+   TVKKG PD+ + ++ AV+VRQ+K +RR +G+ + FE+NA +++
Sbjct:   25 GARVVQIVSVFGYHGVKNRQPKMGLGDLATVTVKKGTPDMKRKLVRAVVVRQKKEFRRPNGLRVSFEENAMILL 98          
The following BLAST results are available for this feature:
BLAST of CK739507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RL14_NITMS4.000e-1251.3550S ribosomal protein L14P OS=Nitrosopumilus marit... [more]
RL14_METB68.912e-1242.5350S ribosomal protein L14P OS=Methanoregula boonei... [more]
RL14_METLZ2.593e-1143.2450S ribosomal protein L14P OS=Methanocorpusculum l... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6345 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739507 ID=CK739507; Name=CK739507; organism=Citrus sinensis; type=EST; length=297bp
ATCAACATGTAACAAGTTCATGATGTCACTGGGTTTGCCAGTGGCAGCAA
CCTGTGAACTGTGCTGACAACACCTGGGGCAAAGAACCTTTACATCATCT
CAGTTAAGGGAATCAAAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTT
GGAGACATGGTTATGGCTACTGTGAAGAAAGGGAAGCCTGATCTTATGAA
GAATGTGATGCCCGCCGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAA
AGGATGGTGTCTTCATGTACTTTGAAGATAATGCAGGTGTTATTGTG
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