CK739508

Overview
NameCK739508
Unique NameCK739508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length306
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_DRANE (30S ribosomal protein S18, chloroplastic OS=Draba nemorosa GN=rps18 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.327e-18
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNR+TLK+QRLITIAIKQARILS LPFLNN+KQFERS  T R   LRTRKK
Sbjct:   45 KILSRRVNRVTLKQQRLITIAIKQARILSLLPFLNNQKQFERSESTPRTTSLRTRKK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_DAUCA (30S ribosomal protein S18, chloroplastic OS=Daucus carota GN=rps18 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.327e-18
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNRLTLK+QRLITIAIKQARILS LPFLNNEKQFER+  T R  GLR R K
Sbjct:   45 KILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERTESTTRTAGLRARNK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_CRUWA (30S ribosomal protein S18, chloroplastic OS=Crucihimalaya wallichii GN=rps18 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.327e-18
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNR+TLK+QRLITIAIKQARILS LPFLNN+KQFERS  T R   LRTRKK
Sbjct:   45 KILSRRVNRVTLKQQRLITIAIKQARILSLLPFLNNQKQFERSESTPRTTSLRTRKK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_CAPBU (30S ribosomal protein S18, chloroplastic OS=Capsella bursa-pastoris GN=rps18 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.327e-18
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNR+TLK+QRLITIAIKQARILS LPFLNN+KQFERS  T R   LRTRKK
Sbjct:   45 KILSRRVNRVTLKQQRLITIAIKQARILSLLPFLNNQKQFERSESTPRTTSLRTRKK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_BARVE (30S ribosomal protein S18, chloroplastic OS=Barbarea verna GN=rps18 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.327e-18
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNR+TLK+QRLITIAIKQARILS LPFLNN+KQFERS  T R   LRTRKK
Sbjct:   45 KILSRRVNRVTLKQQRLITIAIKQARILSLLPFLNNQKQFERSESTPRTTSLRTRKK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_ARATH (30S ribosomal protein S18, chloroplastic OS=Arabidopsis thaliana GN=rps18 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.327e-18
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNR+TLK+QRLITIAIKQARILS LPFLNN+KQFERS  T R   LRTRKK
Sbjct:   45 KILSRRVNRVTLKQQRLITIAIKQARILSLLPFLNNQKQFERSESTPRTTSLRTRKK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_SOYBN (30S ribosomal protein S18, chloroplastic OS=Glycine max GN=rps18 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRK 170
            KILSRRVNRLTLK+QRLITIAIKQARILSSLPFLNNEKQFE+S  TAR   LR +K
Sbjct:   45 KILSRRVNRLTLKQQRLITIAIKQARILSSLPFLNNEKQFEKSESTARTTTLRKKK 100          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_AETCO (30S ribosomal protein S18, chloroplastic OS=Aethionema cordifolium GN=rps18 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNR+TLK+QRLITIAIKQARILS LPF+NN+KQFERS  T R   LRTRKK
Sbjct:   45 KILSRRVNRVTLKQQRLITIAIKQARILSLLPFINNQKQFERSESTPRTTSLRTRKK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_EUCGG (30S ribosomal protein S18, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps18 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17
Identity = 48/57 (84.21%), Postives = 49/57 (85.96%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNRLTLK+QRLITIAIKQARILS LPFLNNEKQFERS  TA   GLRT  K
Sbjct:   45 KILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTAGATGLRTINK 101          
BLAST of CK739508 vs. ExPASy Swiss-Prot
Match: RR18_CERDE (30S ribosomal protein S18, chloroplastic OS=Ceratophyllum demersum GN=rps18 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 3
Query:    3 KILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 173
            KILSRRVNRLTLK+QRLITIAIKQARILSSLPFLNNEKQFER+    R  G RTR K
Sbjct:   45 KILSRRVNRLTLKQQRLITIAIKQARILSSLPFLNNEKQFERTESIPRATGPRTRNK 101          
The following BLAST results are available for this feature:
BLAST of CK739508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RR18_DRANE6.327e-1882.4630S ribosomal protein S18, chloroplastic OS=Draba ... [more]
RR18_DAUCA6.327e-1882.4630S ribosomal protein S18, chloroplastic OS=Daucus... [more]
RR18_CRUWA6.327e-1882.4630S ribosomal protein S18, chloroplastic OS=Crucih... [more]
RR18_CAPBU6.327e-1882.4630S ribosomal protein S18, chloroplastic OS=Capsel... [more]
RR18_BARVE6.327e-1882.4630S ribosomal protein S18, chloroplastic OS=Barbar... [more]
RR18_ARATH6.327e-1882.4630S ribosomal protein S18, chloroplastic OS=Arabid... [more]
RR18_SOYBN1.079e-1783.9330S ribosomal protein S18, chloroplastic OS=Glycin... [more]
RR18_AETCO1.079e-1780.7030S ribosomal protein S18, chloroplastic OS=Aethio... [more]
RR18_EUCGG1.410e-1784.2130S ribosomal protein S18, chloroplastic OS=Eucaly... [more]
RR18_CERDE1.410e-1782.4630S ribosomal protein S18, chloroplastic OS=Cerato... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6346 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739508 ID=CK739508; Name=CK739508; organism=Citrus sinensis; type=EST; length=306bp
GAAAAATATTATCTAGACGGGTGAATAGATTGACCTTAAAAGAACAACGA
TTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTCGTTACCTTT
TCTTAATAATGAGAAACAATTTGAAAGAAGTGGGTTGACCGCTAGACCTC
CCGGTCTTAGAACCAGAAAAAAATAGGCTTACTCTTCAATTAAATAAAAA
TTCCAATCTGAACTCAAACACAGATGGATGTTTTGTTCAAAAAATCTGTG
AAGCAGCAGTTACCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
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