CK739514

Overview
NameCK739514
Unique NameCK739514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: SUFS_KLEP3 (Cysteine desulfurase OS=Klebsiella pneumoniae (strain 342) GN=sufS PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.332e-23
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            IVPWQ++  + GA L+ + LN D +  LD +  +   +T+L+ I  +SN+L +  P+  ++  +H  GAKVLVD  Q+V H  VDVQ L  DF V S HK+ GPTGIG L+G+S+LL
Sbjct:  127 IVPWQMLCARVGAELRVIPLNPDGTLQLDVVPGLFDPRTRLLAITEVSNVLGTENPLAALIALAHQHGAKVLVDGAQAVMHHPVDVQALGCDFYVFSGHKLYGPTGIGVLYGRSELL 243          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: SUFS_SALCH (Cysteine desulfurase OS=Salmonella choleraesuis GN=sufS PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.271e-23
Identity = 53/117 (45.30%), Postives = 77/117 (65.81%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            IVPWQ++ ++ GA L+ + L+ D +  L+ L  +   +T+L+ I H+SN+L +  P+ +++  +   GAKVLVD  Q+V H VVDVQ LD DF V S HK+ GPTGIG L+ K  LL
Sbjct:  127 IVPWQMLCERKGAELRVIPLHPDGTLRLETLAALFDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHVVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALL 243          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: CSD_MYCTU (Probable cysteine desulfurase OS=Mycobacterium tuberculosis GN=csd PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.966e-23
Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            ++PWQ +A++TGA L++  + DD   DLD L   L  + K+V   H SN+   + P+ E+V  +H  GA  ++DACQSVPH  VD+  L  DF   S HKM GP GIG L+G+ +LL
Sbjct:  136 LIPWQELARRTGATLRWYGVTDDGRIDLDSL--YLDDRVKVVAFTHHSNVTGVLTPVSELVSRAHQSGALTVLDACQSVPHQPVDLHELGVDFAAFSGHKMLGPNGIGVLYGRRELL 250          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: CSD_MYCBO (Probable cysteine desulfurase OS=Mycobacterium bovis GN=csd PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.966e-23
Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            ++PWQ +A++TGA L++  + DD   DLD L   L  + K+V   H SN+   + P+ E+V  +H  GA  ++DACQSVPH  VD+  L  DF   S HKM GP GIG L+G+ +LL
Sbjct:  136 LIPWQELARRTGATLRWYGVTDDGRIDLDSL--YLDDRVKVVAFTHHSNVTGVLTPVSELVSRAHQSGALTVLDACQSVPHQPVDLHELGVDFAAFSGHKMLGPNGIGVLYGRRELL 250          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: SUFS_KLEP7 (Cysteine desulfurase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=sufS PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.060e-23
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            IVPWQ++  + GA L+ + LN D +  LD +  +   +T+L+ I  +SN+L +  P+  ++  +H  GAKVLVD  Q+V H  VDVQ L  DF V S+HK+ GPTGIG L+ +S+LL
Sbjct:  127 IVPWQMLCARVGAELRVIPLNPDGTLQLDVVPGLFDPRTRLLAITEVSNVLGTENPLAALIALAHQHGAKVLVDGAQAVMHHPVDVQALGCDFYVFSAHKLYGPTGIGVLYARSELL 243          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: CSD1_MYCLE (Probable cysteine desulfurase 1 OS=Mycobacterium leprae GN=csd1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.060e-23
Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            IVPWQL++ +TGA LK   ++D  +  + + +++L  +TKLV    +SN L ++   E+IV   H  GA+VL+D  QS+PH+ ++V  L ADF V S HK+ GPTGIG L+G  D+L
Sbjct:  329 IVPWQLLSSQTGAILKVAPVDDAGNLLMSEFEDLLGPRTKLVAATQVSNALGTVTQGEKIVELGHRYGARVLIDGAQSIPHLPINVSELGADFFVFSGHKIYGPTGIGVLYGCEDVL 445          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: SUFS_SALTY (Cysteine desulfurase OS=Salmonella typhimurium GN=sufS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.608e-23
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            IVPWQ++ ++ GA L+ + L+ D +  L+ L  +   +T+L+ I H+SN+L +  P+ +++  +   GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL
Sbjct:  127 IVPWQMLCERKGAELRVIPLHPDGTLRLETLAALFDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALL 243          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: SUFS_SALTI (Cysteine desulfurase OS=Salmonella typhi GN=sufS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.608e-23
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            IVPWQ++ ++ GA L+ + L+ D +  L+ L  +   +T+L+ I H+SN+L +  P+ +++  +   GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL
Sbjct:  127 IVPWQMLCERKGAELRVIPLHPDGTLRLETLAALFDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALL 243          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: SUFS_SALNS (Cysteine desulfurase OS=Salmonella newport (strain SL254) GN=sufS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.608e-23
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            IVPWQ++ ++ GA L+ + L+ D +  L+ L  +   +T+L+ I H+SN+L +  P+ +++  +   GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL
Sbjct:  127 IVPWQMLCERKGAELRVIPLHPDGTLRLETLAALFDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALL 243          
BLAST of CK739514 vs. ExPASy Swiss-Prot
Match: SUFS_SALHS (Cysteine desulfurase OS=Salmonella heidelberg (strain SL476) GN=sufS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.608e-23
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 2
Query:    2 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 352
            IVPWQ++ ++ GA L+ + L+ D +  L+ L  +   +T+L+ I H+SN+L +  P+ +++  +   GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL
Sbjct:  127 IVPWQMLCERKGAELRVIPLHPDGTLRLETLAALFDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALL 243          
The following BLAST results are available for this feature:
BLAST of CK739514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
SUFS_KLEP31.332e-2345.30Cysteine desulfurase OS=Klebsiella pneumoniae (str... [more]
SUFS_SALCH2.271e-2345.30Cysteine desulfurase OS=Salmonella choleraesuis GN... [more]
CSD_MYCTU2.966e-2344.44Probable cysteine desulfurase OS=Mycobacterium tub... [more]
CSD_MYCBO2.966e-2344.44Probable cysteine desulfurase OS=Mycobacterium bov... [more]
SUFS_KLEP75.060e-2344.44Cysteine desulfurase OS=Klebsiella pneumoniae subs... [more]
CSD1_MYCLE5.060e-2344.44Probable cysteine desulfurase 1 OS=Mycobacterium l... [more]
SUFS_SALTY6.608e-2344.44Cysteine desulfurase OS=Salmonella typhimurium GN=... [more]
SUFS_SALTI6.608e-2344.44Cysteine desulfurase OS=Salmonella typhi GN=sufS P... [more]
SUFS_SALNS6.608e-2344.44Cysteine desulfurase OS=Salmonella newport (strain... [more]
SUFS_SALHS6.608e-2344.44Cysteine desulfurase OS=Salmonella heidelberg (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6352 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739514 ID=CK739514; Name=CK739514; organism=Citrus sinensis; type=EST; length=352bp
CATCGTTCCCTGGCAGCTTGTAGCTCAAAAGACTGGTGCCAATTTGAAGT
TTTTGAATTTAAATGATGATGAAAGTCCTGATCTTGACAAGTTGAAGGAA
ATGCTTTCAAGGAAAACCAAACTTGTAGTTATTCATCATATCTCTAACAT
GCTTGCTTCTATTCTTCCAATTGAAGAGATTGTACATTGGTCACATGATG
TTGGGGCGAAAGTGCTTGTAGATGCTTGTCAAAGTGTTCCGCACATGGTG
GTTGATGTCCAGGGCCTTGATGCCGATTTTCTTGTTGCCTCTTCTCACAA
GATGTGTGGGCCTACAGGCATTGGATTCTTATTTGGTAAGAGTGATCTCT
TG
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