CK739517

Overview
NameCK739517
Unique NameCK739517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739517 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 4.109e-31
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 2
Query:  107 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLI 523
            ++LF +W++  V+V D SL  YI ++      ++PHT GR+  +RF KA+ PIVERL N LM  GRN GKK +A  IVK A +II+  T +NPIQV+V A+ NS PRED T+I   G+  R +VD++P RRV+QA+  I
Sbjct:   21 IRLFGKWSWVGVEVRDPSLKRYINLKPV----WLPHTGGRHEKRRFGKAEVPIVERLMNKLMRPGRNGGKKHLAYNIVKTAFDIIYFETGENPIQVLVKAIENSAPREDTTKITYGGITYRVSVDVAPQRRVDQALKFI 155          
BLAST of CK739517 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.009e-31
Identity = 66/137 (48.18%), Postives = 95/137 (69.34%), Query Frame = 2
Query:  104 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 514
            ++ LF ++++E+V+VN++SL  YI +        VPH A   +     KA+ PI ER   SLM HGRN+GKK +A+ I + A  IIH +T +NP+QV+VDA++NSGPRED  RIG AG +RR +VD+SPL+R++ AI
Sbjct:   22 EINLFEKYSYEEVKVNNVSLRPYINLS---RRGIVPHAATTITKGTTGKARIPIAERFVCSLMRHGRNSGKKRLAINIFEDACFIIHSMTKKNPLQVLVDAIVNSGPREDTARIGRAGSMRRTSVDVSPLKRISIAI 155          
BLAST of CK739517 vs. ExPASy Swiss-Prot
Match: RS7_DESK1 (30S ribosomal protein S7P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps7p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.154e-31
Identity = 66/141 (46.81%), Postives = 98/141 (69.50%), Query Frame = 2
Query:  104 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLIT 526
            ++KLFN+W+++ ++V D SL  YI ++      Y+PH+ GR+  KRF KA  PIVERL N++M  GRN GKK +A  IVK + E+I+L T +NP+QV+V A+ N+ PRE+ TRI   G+    +VDI+PLRR++ A+  +T
Sbjct:   13 EIKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHSGGRHEHKRFGKALVPIVERLINNVMRPGRNMGKKHLAYNIVKKSFELIYLKTGENPLQVLVRAIENAAPREETTRIMYGGITYHVSVDIAPLRRIDLALRHLT 149          
BLAST of CK739517 vs. ExPASy Swiss-Prot
Match: RS7_SULTO (30S ribosomal protein S7P OS=Sulfolobus tokodaii GN=rps7p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.561e-30
Identity = 70/137 (51.09%), Postives = 94/137 (68.61%), Query Frame = 2
Query:  104 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 514
            D+K+F +W  + V++ D SL  YIG+       Y+PHT GR+  +RF KA+ PIVERL N++M  GRN GKK++A  IVK A +II L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD++P RRV+ A+
Sbjct:   10 DLKVFGKWDTK-VEIRDPSLKKYIGLMPV----YLPHTGGRHEHRRFGKAKLPIVERLINNVMRPGRNKGKKMLAYNIVKTAFDIIALKTGQNPIQVLVKAIENSAPREEVTRIMYGGIVYYVAVDVAPQRRVDLAL 141          
BLAST of CK739517 vs. ExPASy Swiss-Prot
Match: RS7_SULSO (30S ribosomal protein S7P OS=Sulfolobus solfataricus GN=rps7p PE=3 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 5.934e-30
Identity = 69/137 (50.36%), Postives = 92/137 (67.15%), Query Frame = 2
Query:  104 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 514
            D+K+F +W  + V++ D SL  YI +       Y+PHT GR+  +RF KA+ PIVERL N +M  GRN GKK +A  IVK A +II+L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD+SP RR++ A+
Sbjct:    9 DIKVFGKWDTK-VEIRDPSLKKYISLMPV----YLPHTGGRHEHRRFGKAKVPIVERLINQIMRPGRNKGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPREEVTRIMYGGIVYYVAVDVSPQRRIDLAL 140          
BLAST of CK739517 vs. ExPASy Swiss-Prot
Match: RS7_PYRIL (30S ribosomal protein S7P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps7p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.934e-30
Identity = 71/140 (50.71%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  107 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLIT 526
            V LF +W+FE+V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A +II+  T QNPIQV+VDA+IN  PRE+ TRI   G+    +VD+SP RR++ A+  IT
Sbjct:   40 VLLFGKWSFENVVVKDPGLRRYICLKPV----LLPHTEGRYQKHRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDIIYYKTGQNPIQVLVDAIINVAPREEVTRIIMGGIAYTVSVDVSPQRRLDLALRWIT 175          
BLAST of CK739517 vs. ExPASy Swiss-Prot
Match: RS7_METKA (30S ribosomal protein S7P OS=Methanopyrus kandleri GN=rps7p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.012e-29
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 2
Query:  101 YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLIT 526
            Y++K+F +W   +V+V D  L DYI ++      Y+PHT GR++ KRF KA+ PIVERL N +M   +N GKK +A  IVK A +IIH  T +NPIQV+V A+ N+ PRE+ T I   G+   +AVD SP RR++ A+ LIT
Sbjct:   11 YEMKVFGKWDPTEVEVRDPGLKDYICLKPM----YLPHTGGRHAKKRFAKAEVPIVERLINRVMRTEKNTGKKHLAYNIVKRAFDIIHERTGENPIQVLVQALENAAPREETTTIIYGGISYHEAVDSSPQRRLDIALRLIT 148          
BLAST of CK739517 vs. ExPASy Swiss-Prot
Match: RS7_THENV (30S ribosomal protein S7P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps7p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.560e-29
Identity = 67/138 (48.55%), Postives = 89/138 (64.49%), Query Frame = 2
Query:  113 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLIT 526
            LF +W+FE+V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A +I++  T QNPIQV +DA++N+ PRE+ TRI   G+    +VD+SP RR++ A+  IT
Sbjct:   42 LFGKWSFENVVVRDPGLRRYICLKPV----VLPHTEGRYQNYRFGKARIPIVERLINLMMRPGRNAGKKHKAYNIVKRAFDIVYYKTGQNPIQVFIDAIVNTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWIT 175          
BLAST of CK739517 vs. ExPASy Swiss-Prot
Match: RS7_PYRAE (30S ribosomal protein S7P OS=Pyrobaculum aerophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.560e-29
Identity = 66/140 (47.14%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  107 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLIT 526
            + LF +W++EDV V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A ++I+  T +NP+QV +DA+IN+ PRE+ TRI   G+    +VD+SP RR++ A+  IT
Sbjct:   39 ILLFGKWSYEDVVVRDPGLRRYICLKPV----ILPHTEGRYQNTRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDLIYYKTGKNPLQVFIDAIINTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWIT 174          
BLAST of CK739517 vs. ExPASy Swiss-Prot
Match: RS7_SULAC (30S ribosomal protein S7P OS=Sulfolobus acidocaldarius GN=rps7p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.119e-28
Identity = 69/142 (48.59%), Postives = 97/142 (68.31%), Query Frame = 2
Query:  104 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI-YLIT 526
            +VK+F +W  + V+V D SL  YI + +     Y+PHT GR+  +RF K++ PIVERL N+LM  GRN GKK++A  IVK   +II + T QNPIQV+V A+ N+ PRE+ TRI   G+V   AVD++P RRV+ A+ +L+T
Sbjct:   11 NVKVFGKWDTK-VEVRDPSLKKYIDLMSI----YLPHTGGRHEHRRFGKSRIPIVERLINNLMRPGRNKGKKMLAYNIVKTTFDIIAVKTGQNPIQVLVRAIENAAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVT 147          
The following BLAST results are available for this feature:
BLAST of CK739517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_AERPE4.109e-3148.9230S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]
RS5_ENCCU7.009e-3148.1840S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]
RS7_DESK19.154e-3146.8130S ribosomal protein S7P OS=Desulfurococcus kamch... [more]
RS7_SULTO1.561e-3051.0930S ribosomal protein S7P OS=Sulfolobus tokodaii G... [more]
RS7_SULSO5.934e-3050.3630S ribosomal protein S7P OS=Sulfolobus solfataric... [more]
RS7_PYRIL5.934e-3050.7130S ribosomal protein S7P OS=Pyrobaculum islandicu... [more]
RS7_METKA1.012e-2947.8930S ribosomal protein S7P OS=Methanopyrus kandleri... [more]
RS7_THENV6.560e-2948.5530S ribosomal protein S7P OS=Thermoproteus neutrop... [more]
RS7_PYRAE6.560e-2947.1430S ribosomal protein S7P OS=Pyrobaculum aerophilu... [more]
RS7_SULAC1.119e-2848.5930S ribosomal protein S7P OS=Sulfolobus acidocalda... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6355 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739517 ID=CK739517; Name=CK739517; organism=Citrus sinensis; type=EST; length=526bp
AGAACTCAGCGAGCGGCAGCCGATTCTTATTACTTTATCTCTCGGGGTAA
GAATGGCGACTGCTGTAGTGGCACAATCTCAAGACCCATCACAGCCTCAC
TACGATGTGAAGCTCTTCAATAGGTGGACTTTCGAGGATGTTCAGGTCAA
TGACATCTCGTTGAGTGATTATATTGGCGTGCAAGCGGCCAAGCACGCTA
CTTATGTGCCTCACACTGCTGGGAGGTACTCAGTTAAGCGTTTCCGGAAG
GCCCAATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGG
TCGTAACAACGGCAAGAAATTGATGGCCGTCAGGATTGTTAAGCATGCCA
TGGAGATCATTCACCTTTTGACCGACCAGAACCCAATTCAAGTCATTGTT
GATGCTGTCATCAACAGTGGTCCAAGGGAAGATGCTACCCGTATTGGATC
TGCTGGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCATTGCGCCGTG
TGAATCAAGCGATCTATCTAATCACC
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