CK739518 | Citrus Genome Database

Overview


Name	CK739518
Unique Name	CK739518
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	588

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK739518 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.458e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 2

Query:  125 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 352
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 5.542e-33
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 2

Query:  353 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKHLEDGRTLADYNIQKESTLHLVLRLRGG 580
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK LE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 82.4185 bits (202), Expect = 1.791e-15
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 2

Query:    2 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 124
            IPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   36 IPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CK739518 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.691e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 2

Query:  125 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 352
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 135.576 bits (340), Expect = 1.783e-31
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 2

Query:  353 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKHLEDGRTLADYNIQKESTLHLVLRLRGG 580
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA K LE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 79.7221 bits (195), Expect = 1.161e-14
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 2

Query:    2 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 124
            IPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   36 IPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CK739518 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.409e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 2

Query:  125 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 352
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 123.25 bits (308), Expect = 9.155e-28
Identity = 60/76 (78.95%), Postives = 66/76 (86.84%), Query Frame = 2

Query:  353 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKHLEDGRTLADYNIQKESTLHLVLRLRGG 580
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGK LED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

HSP 3 Score: 75.485 bits (184), Expect = 2.189e-13
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 2

Query:    2 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 124
            +P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   36 VPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of CK739518 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.562e-27
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 2

Query:  125 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 352
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 121.709 bits (304), Expect = 2.664e-27
Identity = 57/77 (74.03%), Postives = 68/77 (88.31%), Query Frame = 2

Query:  353 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKHLEDGRTLADYNIQKESTLHLVLRLRGGF 583
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGK LED +T+ADYNIQKESTLH+VLRLRGG+
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGGY 77

HSP 3 Score: 76.2554 bits (186), Expect = 1.283e-13
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 2

Query:    2 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 124
            +P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   36 VPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of CK739518 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.934e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 2

Query:  158 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 346
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 2 Score: 118.627 bits (296), Expect = 2.255e-26
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 2

Query:  386 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKHLEDGRTLADYNIQKESTLHLVLRLR 574
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK LEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 3 Score: 79.337 bits (194), Expect = 1.516e-14
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 2

Query:    2 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 118
            IPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:   25 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

[Close]

BLAST of CK739518 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.416e-20
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 2

Query:  131 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 352
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 98.5969 bits (244), Expect = 2.415e-20
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 2

Query:  359 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKHLEDGRTLADYNIQKESTLHLVLRLRGGF 583
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGK L D +T  DYNI+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 77

[Close]

BLAST of CK739518 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.416e-20
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 2

Query:  359 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKHLEDGRTLADYNIQKESTLHLVLRLRGGF 583
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGK L D +T  DYNI+  S LHLVL LRGGF
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGF 77

HSP 2 Score: 98.9821 bits (245), Expect = 1.849e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2

Query:  131 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 352
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of CK739518 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.849e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2

Query:  131 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 352
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 97.0561 bits (240), Expect = 7.026e-20
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 2

Query:  359 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKHLEDGRTLADYNIQKESTLHLVLRLRGG 580
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGK L D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of CK739518 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.849e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2

Query:  131 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 352
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 98.2117 bits (243), Expect = 3.154e-20
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 2

Query:  359 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKHLEDGRTLADYNIQKESTLHLVLRLRGGF 583
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGK L D +T  DYNI+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 77

[Close]

BLAST of CK739518 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.849e-20
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 2

Query:  125 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 361
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79

HSP 2 Score: 96.6709 bits (239), Expect = 9.177e-20
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  353 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKHLEDGRTLADYNIQKESTLHLVLRLRGG 580
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GK + D +T ADY +Q  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76

The following BLAST results are available for this feature:

BLAST of CK739518 vs. ExPASy Swiss-Prot

BLAST of CK739518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99


Match Name	E-value	Identity	Description
UBIQ_LEIMA	1.458e-33	93.42	Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1	[more]
UBIQ_LEITA	4.691e-32	90.79	Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3...	[more]
UBIL_NPVOP	2.409e-28	80.26	Ubiquitin-like protein OS=Orgyia pseudotsugata mul...	[more]
UBIL_NPVAC	1.562e-27	76.32	Ubiquitin-like protein OS=Autographa californica n...	[more]
UBIQ_LUMTE	5.934e-27	95.24	Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ...	[more]
RUB1_DESAN	1.416e-20	64.86	NEDD8-like protein RUB1 OS=Deschampsia antarctica ...	[more]
RUB1_ARATH	1.416e-20	62.67	NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN...	[more]
RUB2_ORYSJ	1.849e-20	63.51	NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap...	[more]
RUB1_ORYSJ	1.849e-20	63.51	NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap...	[more]
NEDD8_DROME	1.849e-20	58.23	NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_6356 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62D12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739518 ID=CK739518; Name=CK739518; organism=Citrus sinensis; type=EST; length=588bp
CATTCCTCCCGACCAGCAGAGGTTGATTTTTGCTGGCAAGCAGCTTGAAG
ATGGTAGGACCCTTGCAGATTATAACATTCAGAAGGAGTCCACCCTTCAC
TTGGTTCTCCGCCTTCGTGGTGGCATGCAAATTTTTGTGAAGACTCTCAC
TGGAAAAACAATCACTCTGGAGGTAGAGAGTTCGGACACTATTGATAATG
TGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAGCAGAGG
TTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTA
CAACATTCAGAAGGAATCCACACTGCATTTGGTGTTGAGACTGCGTGGAG
GAATGCAGATTTTCGTGAAGACATTGACGGGAAAAACCATTACCCTGGAG
GTTGAGAGTTCAGACACCATTGATAATGTGAAGGCTAAAATCCAGGACAA
GGAAGGGATTCCTCCAGATCAGCAGAGGTTGATTTTTGCCGGGAAGCACC
TGGAGGATGGGCGTACTTTGGCTGACTACAATATCCAGAAGGAGTCTACT
TTACATCTTGTCCTTCGCCTGCGTGGGGGGTTTTAATG