CK739523

Overview
NameCK739523
Unique NameCK739523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.617e-13
Identity = 43/83 (51.81%), Postives = 50/83 (60.24%), Query Frame = 3
Query:   18 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTPK 257
            G D  YPG   FDPLG     P+   EL+ KEIKNGRLAM A +G + Q I TG GPI+NL  HLA+P     FA    FTP+
Sbjct:  193 GLDPLYPGEA-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTPQ 273          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.617e-13
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 3
Query:   21 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            TD  YPGG  FDPLG     PE + EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:  176 TDPIYPGGS-FDPLGLAD-DPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 250          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.617e-13
Identity = 44/82 (53.66%), Postives = 51/82 (62.20%), Query Frame = 3
Query:   18 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 254
            G D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  H+ADP   +A  FA  F P
Sbjct:  183 GLDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVP 262          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13
Identity = 44/82 (53.66%), Postives = 51/82 (62.20%), Query Frame = 3
Query:   18 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 254
            G D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  H+ADP   +A  FA  F P
Sbjct:  184 GLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVP 263          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13
Identity = 39/68 (57.35%), Postives = 45/68 (66.18%), Query Frame = 3
Query:   18 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 221
            G D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  H+ADP
Sbjct:  184 GLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 249          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   24 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            D+ YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  HLADP +   +A  T
Sbjct:  188 DLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFAT 261          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   24 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            D+ YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:  187 DLLYPGGS-FDPLGLAT-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 260          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13
Identity = 39/68 (57.35%), Postives = 45/68 (66.18%), Query Frame = 3
Query:   18 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 221
            G D  YPGG  FDPLG     P+   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLADP
Sbjct:  184 GLDPIYPGGA-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   24 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            D+ YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  HLADP +   +A  T
Sbjct:  188 DLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFAT 261          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.875e-13
Identity = 43/84 (51.19%), Postives = 50/84 (59.52%), Query Frame = 3
Query:   12 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA---FTP 254
            L   D  YPGG  FDPLG     P+   EL+ KEIKNGRLAM + +G + Q I TG GP+ NL  HLADP     FA+   FTP
Sbjct:  170 LDDLDTLYPGGP-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTP 251          
The following BLAST results are available for this feature:
BLAST of CK739523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB2_DUNSA4.617e-1351.81Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_SOYBN4.617e-1351.95Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_LEMGI4.617e-1353.66Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_PETSP6.030e-1353.66Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC6.030e-1357.35Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB22_ARATH6.030e-1352.63Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SINAL6.030e-1352.63Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_GOSHI6.030e-1357.35Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_ARATH6.030e-1352.63Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2_DUNTE7.875e-1351.19Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6361 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739523 ID=CK739523; Name=CK739523; organism=Citrus sinensis; type=EST; length=402bp
CCAACAACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCTTTGG
TTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGGAGCT
GAGGACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTGATGG
GTGCTTGGTTCCAGCACATTTACACCGGCACCGGCCCCATTGACAATCTC
ATTGCTCACCTTGCTGATCCTGGTCATGCCACCGTTTTTGCTGCCTTCAC
CCCCAAGTGAGATGATGACGAACAAAGGGAGAGAAATTTGGGCCAAGTGG
AAGCTTGAGATCAAAGGAATTGGTGTTTCTCTTAGGGAAAGGTTGTATGA
TTAGAACTTGTATTAATTGCCTCTATCTATGTACAAAGACTTGTGTGATC
AC
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