CK739523

Overview
NameCK739523
Unique NameCK739523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 221
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:  190 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 39/68 (57.35%), Postives = 44/68 (64.71%), Query Frame = 3
Query:   18 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 221
            G D   PGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLADP
Sbjct:  185 GLDPLLPGGA-FDPLGLAD-DPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 250          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            YPGG  FDPLG     PE   EL  KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:  190 YPGGS-FDPLGLAD-DPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 260          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 3
Query:   18 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 254
            G D  YPGG  FDPLG     P+   EL+ KE+KNGRLAM ++ G + Q I TG GPI NL  H+ADP   +A  FA  F P
Sbjct:  184 GLDPLYPGGA-FDPLGLAD-DPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVP 263          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.908e-12
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            Y GG  FDPLG G   PE+  EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HL DP +   +A  T
Sbjct:  188 YLGGS-FDPLGLGD-DPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYAT 258          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.908e-12
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 3
Query:   21 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            TD  YPGG  FDPLG     P+   +++ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLADP +   +A  T
Sbjct:  198 TDPIYPGGN-FDPLGLAD-DPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYAT 272          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.908e-12
Identity = 38/68 (55.88%), Postives = 44/68 (64.71%), Query Frame = 3
Query:   18 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 221
            G D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  H+ DP
Sbjct:  184 GLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDP 249          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.105e-12
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 221
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q + TG GP++NL  HLADP
Sbjct:  190 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADP 250          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.105e-12
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 3
Query:   21 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            TD  YPGG  FDPLG     PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HLA P +   +A  T
Sbjct:  183 TDPIYPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYAT 257          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.105e-12
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 221
            YPGG  FDPLG     PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:  193 YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 253          
The following BLAST results are available for this feature:
BLAST of CK739523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB21_TOBAC2.993e-1258.73Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_PINTH2.993e-1257.35Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_PETSP2.993e-1253.42Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB215_PEA2.993e-1251.22Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB48_MAIZE3.908e-1253.42Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2A_PYRPY3.908e-1250.65Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB24_SOLLC3.908e-1255.88Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB25_NICPL5.105e-1257.14Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB23_SOYBN5.105e-1250.65Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_PEA5.105e-1257.14Chlorophyll a-b binding protein AB80, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6361 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739523 ID=CK739523; Name=CK739523; organism=Citrus sinensis; type=EST; length=402bp
CCAACAACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCTTTGG
TTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGGAGCT
GAGGACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTGATGG
GTGCTTGGTTCCAGCACATTTACACCGGCACCGGCCCCATTGACAATCTC
ATTGCTCACCTTGCTGATCCTGGTCATGCCACCGTTTTTGCTGCCTTCAC
CCCCAAGTGAGATGATGACGAACAAAGGGAGAGAAATTTGGGCCAAGTGG
AAGCTTGAGATCAAAGGAATTGGTGTTTCTCTTAGGGAAAGGTTGTATGA
TTAGAACTTGTATTAATTGCCTCTATCTATGTACAAAGACTTGTGTGATC
AC
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