CK739529

Overview
NameCK739529
Unique NameCK739529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA1_RAT (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Rattus norvegicus GN=Isca1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.037e-22
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            L++GV+ RGCNGLSY+L Y   K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   48 LKVGVRTRGCNGLSYSLEYTKTKGDADEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA1_MOUSE (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Mus musculus GN=Isca1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.037e-22
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            L++GV+ RGCNGLSY+L Y   K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   48 LKVGVRTRGCNGLSYSLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISA1_SCHPO (Iron sulfur assembly protein 1 OS=Schizosaccharomyces pombe GN=isa1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.139e-20
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 254
            LR+GVK +GC G +Y+L Y ++  KFDE+V+  G+ I++  +AL+ +IG+ MD+ DD L+S F+F NPN K  CGCGESF T
Sbjct:  107 LRIGVKQKGCAGQAYSLEYIEKPDKFDEIVKQDGISIIVARRALLQIIGSVMDYRDDDLQSRFIFSNPNVKSTCGCGESFST 188          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_PECCP (Iron-binding protein iscA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=iscA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.327e-20
Identity = 41/80 (51.25%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + D+ +  D V EDKG+K+++D K+L+++ GT++DFV + L   F F NPNS G+CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDDLNDGDTVFEDKGIKVIVDGKSLVYLDGTELDFVKEGLNEGFKFNNPNSSGECGCGESF 105          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_KLEP7 (Iron-binding protein iscA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=iscA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-19
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPAAEDTVFEDKGVKVVIDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_KLEP3 (Iron-binding protein iscA OS=Klebsiella pneumoniae (strain 342) GN=iscA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-19
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPAAEDTVFEDKGVKVVIDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_ERWCT (Iron-binding protein iscA OS=Erwinia carotovora subsp. atroseptica GN=iscA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-19
Identity = 41/80 (51.25%), Postives = 59/80 (73.75%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + D+ +  D V EDKGVK+++D K+L+++ GT++DFV + L   F F NPN  G+CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDDLNDGDTVFEDKGVKVIVDGKSLVYLDGTELDFVKEGLNEGFKFNNPNISGECGCGESF 105          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_ENT38 (Iron-binding protein iscA OS=Enterobacter sp. (strain 638) GN=iscA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-19
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPATDDTVFEDKGVKVVIDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_XENNE (Iron-binding protein iscA OS=Xenorhabdus nematophilus GN=iscA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L +AD  ++ D+V EDKGVK+++D K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFADVVNEEDQVFEDKGVKVIVDGKSILYLDGTELDFVKEGLNEGFKFNNPNVSSECGCGESF 105          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_SALTY (Iron-binding protein iscA OS=Salmonella typhimurium GN=iscA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105          
The following BLAST results are available for this feature:
BLAST of CK739529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
ISCA1_RAT6.037e-2258.75Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_MOUSE6.037e-2258.75Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISA1_SCHPO1.139e-2051.22Iron sulfur assembly protein 1 OS=Schizosaccharomy... [more]
ISCA_PECCP4.327e-2051.25Iron-binding protein iscA OS=Pectobacterium caroto... [more]
ISCA_KLEP71.644e-1953.75Iron-binding protein iscA OS=Klebsiella pneumoniae... [more]
ISCA_KLEP31.644e-1953.75Iron-binding protein iscA OS=Klebsiella pneumoniae... [more]
ISCA_ERWCT1.644e-1951.25Iron-binding protein iscA OS=Erwinia carotovora su... [more]
ISCA_ENT381.644e-1953.75Iron-binding protein iscA OS=Enterobacter sp. (str... [more]
ISCA_XENNE2.805e-1950.00Iron-binding protein iscA OS=Xenorhabdus nematophi... [more]
ISCA_SALTY2.805e-1952.50Iron-binding protein iscA OS=Salmonella typhimuriu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6367 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739529 ID=CK739529; Name=CK739529; organism=Citrus sinensis; type=EST; length=532bp
GTCCTTTCCTCCGTCTTGGCGTTAAGGCTCGCGGCTGCAACGGCTTATCC
TACACCCTCAATTATGCAGACGAGAAATCAAAGTTCGATGAGGTGGTTGA
GGACAAGGGCGTTAAGATATTAATTGATCCGAAGGCACTGATGCATGTTA
TAGGAACCAAGATGGATTTCGTAGATGACAAACTCAGATCTGAGTTTGTA
TTCATCAACCCCAACTCGAAAGGGCAGTGTGGTTGTGGAGAGTCCTTTAT
GACAACAAGCAGTGCGGAAGCTGCTAAGCGAGGTCGTAGTTAATGATTAT
CATCTTAACTTCATTTTATCTCGTGGCGATCTTGCATATTTCATGCTGTC
CAAGCAACCTTTTGATTCCCACTTACACTGTTACTTATGTACGTAGACTA
TAACATAGATCAGAATTGTGGCTTACGCTCATGTAAATAATGGTGATAAT
AGTATGGTAATTCACTGTGGTTTGGTTTAAACATCAAAATCTTGATTCAA
GTATTTAGAGTTTGCCTTTTCCAAACTCTATT
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