CK739529

Overview
NameCK739529
Unique NameCK739529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_VESOH (Iron-sulfur cluster insertion protein erpA OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=erpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.141e-12
Identity = 29/81 (35.80%), Postives = 52/81 (64.20%), Query Frame = 3
Query:    6 FLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            +LR+ +   GC+G SY   + +++ + D  V + GV+++IDP +  ++IG  +D+++D   + F+  NPN+K  CGCG SF
Sbjct:   35 YLRVYITGGGCSGFSYGFTFDEKRKEGDSSVTNNGVQLVIDPMSYQYLIGATVDYLEDLQGARFIIHNPNAKTTCGCGSSF 115          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCAP_ARATH (Iron-sulfur assembly protein IscA, chloroplastic OS=Arabidopsis thaliana GN=ISCA PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.947e-12
Identity = 32/82 (39.02%), Postives = 53/82 (64.63%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKF--DEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+GVK  GC+G+SYT+++ +  +    D  +E +G  I+ DPK+++ + G ++D+ D  +   F F NPN+   CGCG+SF
Sbjct:   95 LRIGVKQGGCSGMSYTMDFENRANARPDDSTIEYQGFTIVCDPKSMLFLFGMQLDYSDALIGGGFSFSNPNATQTCGCGKSF 176          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA2_POLNA (Putative iron-sulfur cluster insertion protein erpA 2 OS=Polaromonas naphthalenivorans (strain CJ2) GN=erpA2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.542e-12
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRL V   GC+G SY   + D+ ++ D ++  +GV +++D  +L +V+G ++DF D    S FV  NPN++  CGCG SF
Sbjct:   44 LRLYVTGGGCSGFSYGFAFDDQTAEDDTLIVTEGVALVVDAMSLQYVLGARVDFEDGLEGSRFVIHNPNAQSTCGCGSSF 123          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_YERPY (Iron--sulfur cluster insertion protein erpA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ +   GC+G  Y   + D+ +  D  +E +GV++++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNDGDMTIEKQGVELVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_YERPS (Iron-sulfur cluster insertion protein erpA OS=Yersinia pseudotuberculosis GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ +   GC+G  Y   + D+ +  D  +E +GV++++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNDGDMTIEKQGVELVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_YERPP (Iron-sulfur cluster insertion protein erpA OS=Yersinia pestis (strain Pestoides F) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ +   GC+G  Y   + D+ +  D  +E +GV++++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNDGDMTIEKQGVELVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_YERPN (Iron-sulfur cluster insertion protein erpA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ +   GC+G  Y   + D+ +  D  +E +GV++++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNDGDMTIEKQGVELVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_YERPG (Iron--sulfur cluster insertion protein erpA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ +   GC+G  Y   + D+ +  D  +E +GV++++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNDGDMTIEKQGVELVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_YERPE (Iron-sulfur cluster insertion protein erpA OS=Yersinia pestis GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ +   GC+G  Y   + D+ +  D  +E +GV++++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNDGDMTIEKQGVELVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_YERPB (Iron--sulfur cluster insertion protein erpA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ +   GC+G  Y   + D+ +  D  +E +GV++++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNDGDMTIEKQGVELVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112          
The following BLAST results are available for this feature:
BLAST of CK739529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
ERPA_VESOH1.141e-1235.80Iron-sulfur cluster insertion protein erpA OS=Vesi... [more]
ISCAP_ARATH1.947e-1239.02Iron-sulfur assembly protein IscA, chloroplastic O... [more]
ERPA2_POLNA2.542e-1240.00Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_YERPY4.337e-1235.00Iron--sulfur cluster insertion protein erpA OS=Yer... [more]
ERPA_YERPS4.337e-1235.00Iron-sulfur cluster insertion protein erpA OS=Yers... [more]
ERPA_YERPP4.337e-1235.00Iron-sulfur cluster insertion protein erpA OS=Yers... [more]
ERPA_YERPN4.337e-1235.00Iron-sulfur cluster insertion protein erpA OS=Yers... [more]
ERPA_YERPG4.337e-1235.00Iron--sulfur cluster insertion protein erpA OS=Yer... [more]
ERPA_YERPE4.337e-1235.00Iron-sulfur cluster insertion protein erpA OS=Yers... [more]
ERPA_YERPB4.337e-1235.00Iron--sulfur cluster insertion protein erpA OS=Yer... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6367 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739529 ID=CK739529; Name=CK739529; organism=Citrus sinensis; type=EST; length=532bp
GTCCTTTCCTCCGTCTTGGCGTTAAGGCTCGCGGCTGCAACGGCTTATCC
TACACCCTCAATTATGCAGACGAGAAATCAAAGTTCGATGAGGTGGTTGA
GGACAAGGGCGTTAAGATATTAATTGATCCGAAGGCACTGATGCATGTTA
TAGGAACCAAGATGGATTTCGTAGATGACAAACTCAGATCTGAGTTTGTA
TTCATCAACCCCAACTCGAAAGGGCAGTGTGGTTGTGGAGAGTCCTTTAT
GACAACAAGCAGTGCGGAAGCTGCTAAGCGAGGTCGTAGTTAATGATTAT
CATCTTAACTTCATTTTATCTCGTGGCGATCTTGCATATTTCATGCTGTC
CAAGCAACCTTTTGATTCCCACTTACACTGTTACTTATGTACGTAGACTA
TAACATAGATCAGAATTGTGGCTTACGCTCATGTAAATAATGGTGATAAT
AGTATGGTAATTCACTGTGGTTTGGTTTAAACATCAAAATCTTGATTCAA
GTATTTAGAGTTTGCCTTTTCCAAACTCTATT
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