CK739543

Overview
NameCK739543
Unique NameCK739543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_THEEB (Glycine dehydrogenase [decarboxylating] OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.789e-19
Identity = 41/68 (60.29%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 204
            IE G +D   N LK APHP  +L  + W  PYSRE AAYPA WLR  KFWPA  R+DN YGDR+L+CT
Sbjct:  880 IEAGVSDRQQNPLKNAPHPALMLATEPWPYPYSREVAAYPAPWLREYKFWPAVARIDNAYGDRHLVCT 947          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_NOSP7 (Glycine dehydrogenase [decarboxylating] OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gcvP PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.789e-19
Identity = 41/71 (57.75%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE GK D  +NVLK APH    L+   W  PYSRE AAYPA W R  KFWPA GR+D  +GDRN +C+ LP
Sbjct:  903 IEVGKVDAQDNVLKNAPHTAESLITGEWQHPYSREQAAYPAPWTREYKFWPAVGRIDAAFGDRNFVCSCLP 973          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIN (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans GN=gcvP PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.789e-19
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            ++NG  D  +N LK +PH  +++  D W   Y RE AAYPASWL+  KFWP  GRVDNVYGDRNL+C+ LP
Sbjct:  889 VQNGTLDKTDNPLKNSPHTAAMVTSDRWDHLYPRERAAYPASWLKDHKFWPYVGRVDNVYGDRNLVCSCLP 959          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIC (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.200e-18
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            +++G  D  +N LK +PH  +++  D W   Y RE AAYPASWL+  KFWP  GRVDNVYGDRNL+C+ LP
Sbjct:  889 VQSGTLDKTDNPLKNSPHTAAMVTSDRWDHLYPRERAAYPASWLKDHKFWPYVGRVDNVYGDRNLVCSCLP 959          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_ANASP (Glycine dehydrogenase [decarboxylating] OS=Anabaena sp. (strain PCC 7120) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.200e-18
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE GK DI +N LK APH    L+   W  PYSRE AAYPA W R  KFWP+ GR+D  +GDRN +C+ LP
Sbjct:  908 IEAGKVDIQDNSLKNAPHTVESLIVGEWPHPYSREQAAYPAPWTREHKFWPSVGRIDAAFGDRNFVCSCLP 978          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_AKKM8 (Glycine dehydrogenase [decarboxylating] OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.873e-18
Identity = 41/68 (60.29%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 204
            I NG AD  +NVLK +PH   ++  D W  PYSR  AAYP S L   KFWP  GRVDNVYGDRNL+CT
Sbjct:  868 IINGTADKEDNVLKNSPHTAEMVSADEWRHPYSRSEAAYPVSGLLIHKFWPYVGRVDNVYGDRNLVCT 935          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_LEPBL (Glycine dehydrogenase [decarboxylating] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=gcvP PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.432e-17
Identity = 38/71 (53.52%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            ++NG  D  +N LK +PH  ++   D W   Y +E AAYPA W R  KFWP  GRVDNVYGDRNL+C+ LP
Sbjct:  889 VQNGTLDKIDNPLKNSPHTAAMTTSDRWDHLYPKERAAYPAPWSRDHKFWPFVGRVDNVYGDRNLVCSCLP 959          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_LEPBJ (Glycine dehydrogenase [decarboxylating] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=gcvP PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.432e-17
Identity = 38/71 (53.52%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            ++NG  D  +N LK +PH  ++   D W   Y +E AAYPA W R  KFWP  GRVDNVYGDRNL+C+ LP
Sbjct:  889 VQNGTLDKIDNPLKNSPHTAAMTTSDRWDHLYPKERAAYPAPWSRDHKFWPFVGRVDNVYGDRNLVCSCLP 959          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_BORPD (Glycine dehydrogenase [decarboxylating] OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=gcvP PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.177e-17
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            +E G+ D  +NVLK APH   +L+ + W   Y R+ AAYP + LR AK+WP   RVDN YGDRNL+C  LP
Sbjct:  882 VERGERDRDDNVLKNAPHTAQMLLAEEWLHDYPRQQAAYPVASLRDAKYWPPVARVDNAYGDRNLVCACLP 952          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_FLAJ1 (Glycine dehydrogenase [decarboxylating] OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=gcvP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.149e-17
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE   AD  NNVLK APH  ++L  D+W  PYSRE AAYP  ++   KFWP+  RVD+ YGDRNL+C+  P
Sbjct:  872 IEAATADDKNNVLKNAPHTLAMLTSDSWDFPYSREKAAYPLEYIADNKFWPSVRRVDDAYGDRNLVCSCAP 942          
The following BLAST results are available for this feature:
BLAST of CK739543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
GCSP_THEEB5.789e-1960.29Glycine dehydrogenase [decarboxylating] OS=Thermos... [more]
GCSP_NOSP75.789e-1957.75Glycine dehydrogenase [decarboxylating] OS=Nostoc ... [more]
GCSP_LEPIN5.789e-1956.34Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_LEPIC2.200e-1854.93Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_ANASP2.200e-1856.34Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]
GCSP_AKKM82.873e-1860.29Glycine dehydrogenase [decarboxylating] OS=Akkerma... [more]
GCSP_LEPBL2.432e-1753.52Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_LEPBJ2.432e-1753.52Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_BORPD3.177e-1752.11Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_FLAJ14.149e-1754.93Glycine dehydrogenase [decarboxylating] OS=Flavoba... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739543 ID=CK739543; Name=CK739543; organism=Citrus sinensis; type=EST; length=352bp
ATTGAAAATGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCGCC
TCATCCACCATCTTTGCTCATGGGAGATACATGGACTAAACCATACTCTC
GAGAATATGCAGCCTATCCTGCTTCCTGGCTCCGGTTTGCTAAGTTCTGG
CCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATCTG
CACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCACTG
CTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAGCA
TGGAAAAATTTGGAATCATCAACACTTCCTGATTTGATTGTATATATGAA
TA
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