CK739543

Overview
NameCK739543
Unique NameCK739543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_BORA1 (Glycine dehydrogenase [decarboxylating] OS=Bordetella avium (strain 197N) GN=gcvP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.243e-17
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            +E G+ D  +NVLK APH   +L+ + W   Y R+ AAYP + LR  K+WP   RVDN YGDRNL+C+ LP
Sbjct:  880 VERGERDREDNVLKNAPHTAQMLLAEEWHHAYPRQQAAYPLASLRDGKYWPPVARVDNAYGDRNLVCSCLP 950          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_RALME (Glycine dehydrogenase [decarboxylating] OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=gcvP PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.577e-16
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            +E+G  D  +N LK APH  ++++ D W   Y+RE AAYP + LR  K+WP  GR DNVYGDRNL C+ +P
Sbjct:  897 VEDGSFDREDNPLKHAPHTAAVVVSDKWNHKYTREEAAYPVASLRTQKYWPPVGRADNVYGDRNLFCSCVP 967          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_RALEJ (Glycine dehydrogenase [decarboxylating] OS=Ralstonia eutropha (strain JMP134) GN=gcvP PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.577e-16
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            +E+G  D  +N LK APH  +++  + WT+ Y+RE AAYP + LR  K+WP  GR DNVYGDRNL C+ +P
Sbjct:  899 VEDGSFDRDDNPLKHAPHTAAVVTANEWTRKYTREEAAYPVASLRTQKYWPPVGRADNVYGDRNLFCSCVP 969          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_DICDI (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Dictyostelium discoideum GN=gcvP PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.577e-16
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE GKAD  NNVL  +PH   +++ D W  PYSR  AA+P      +KFWP  GR+DNV+GD+NL+C+  P
Sbjct:  919 IETGKADRKNNVLVNSPHTEKVIVADNWNYPYSRSKAAFPTPATVASKFWPTVGRIDNVHGDKNLVCSCPP 989          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_RALPJ (Glycine dehydrogenase [decarboxylating] OS=Ralstonia pickettii (strain 12J) GN=gcvP PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.689e-16
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    7 NGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            +G+ D  +N LK APH  +++M D W+  Y+RE AAYP + LR  K+WP  GR DNVYGDRNL C  +P
Sbjct:  904 SGEFDREDNPLKHAPHTAAVVMADDWSHKYTREQAAYPVASLRARKYWPPVGRADNVYGDRNLFCACVP 972          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_BORPA (Glycine dehydrogenase [decarboxylating] OS=Bordetella parapertussis GN=gcvP PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.689e-16
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE+G+ D  +NVL+ APH   +L+ + W   Y R+ AAYP + LR  K+WP   RVDN YGDRNL+C  LP
Sbjct:  879 IESGERDRDDNVLRNAPHTAQMLLAEEWHHDYPRQQAAYPVASLRENKYWPPVARVDNAYGDRNLVCACLP 949          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_BORBR (Glycine dehydrogenase [decarboxylating] OS=Bordetella bronchiseptica GN=gcvP PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.689e-16
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE+G+ D  +NVL+ APH   +L+ + W   Y R+ AAYP + LR  K+WP   RVDN YGDRNL+C  LP
Sbjct:  879 IESGERDRDDNVLRNAPHTAQMLLAEEWHHDYPRQQAAYPVASLRENKYWPPVARVDNAYGDRNLVCACLP 949          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_BORPE (Glycine dehydrogenase [decarboxylating] OS=Bordetella pertussis GN=gcvP PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.512e-16
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            +E+G+ D  +NVL+ APH   +L+ + W   Y R+ AAYP + LR  K+WP   RVDN YGDRNL+C  LP
Sbjct:  879 VESGERDRDDNVLRNAPHTAQMLLAEEWHHDYPRQQAAYPVASLRENKYWPPVARVDNAYGDRNLVCACLP 949          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP1_PSEPF (Glycine dehydrogenase [decarboxylating] 1 OS=Pseudomonas fluorescens (strain Pf0-1) GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.587e-16
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLIC 201
            +ENG  D  +N LK APH  + L+G+ WT PYSRE A YP + L   K+WP  GRVDNV+GDRNL+C
Sbjct:  876 VENGTLDKDDNPLKNAPHTAAELVGE-WTHPYSREQAVYPVASLIEGKYWPPVGRVDNVFGDRNLVC 941          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_SYNR3 (Glycine dehydrogenase [decarboxylating] OS=Synechococcus sp. (strain RCC307) GN=gcvP PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.824e-16
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 204
            IE G  D  +N L+ APH  + +  D W +PYSRE AAYP   LR  K WPA  R+DN +GDRNLICT
Sbjct:  878 IEAGLCDRDDNPLRRAPHTLAAVTADVWERPYSREQAAYPVQGLRSNKLWPAVSRIDNAFGDRNLICT 945          
The following BLAST results are available for this feature:
BLAST of CK739543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
GCSP_BORA19.243e-1750.70Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_RALME1.577e-1650.70Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_RALEJ1.577e-1650.70Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_DICDI1.577e-1650.70Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_RALPJ2.689e-1652.17Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_BORPA2.689e-1650.70Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_BORBR2.689e-1650.70Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_BORPE3.512e-1649.30Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP1_PSEPF4.587e-1656.72Glycine dehydrogenase [decarboxylating] 1 OS=Pseud... [more]
GCSP_SYNR37.824e-1654.41Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739543 ID=CK739543; Name=CK739543; organism=Citrus sinensis; type=EST; length=352bp
ATTGAAAATGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCGCC
TCATCCACCATCTTTGCTCATGGGAGATACATGGACTAAACCATACTCTC
GAGAATATGCAGCCTATCCTGCTTCCTGGCTCCGGTTTGCTAAGTTCTGG
CCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATCTG
CACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCACTG
CTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAGCA
TGGAAAAATTTGGAATCATCAACACTTCCTGATTTGATTGTATATATGAA
TA
back to top