CK739543

Overview
NameCK739543
Unique NameCK739543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP1_PSEAE (Glycine dehydrogenase [decarboxylating] 1 OS=Pseudomonas aeruginosa GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.335e-15
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            +E G+ D  +N LK APH  + L+G+ W   YSRE AAYP + L  AK+WP  GRVDNVYGDRNL C+  P
Sbjct:  883 VERGELDKEDNPLKNAPHTAAELLGE-WNHAYSREQAAYPLASLVEAKYWPPVGRVDNVYGDRNLTCSCPP 952          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_VIBFM (Glycine dehydrogenase [decarboxylating] OS=Vibrio fischeri (strain MJ11) GN=gcvP PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.277e-15
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 204
            +E G+  + NN L  APH    LM D+W  PY+RE A +P+S  + +K+WP   RVDNVYGDRNLIC+
Sbjct:  879 VEQGEWPLDNNPLVNAPHTQVDLMSDSWDHPYTREVACFPSSQSKDSKYWPTVNRVDNVYGDRNLICS 946          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_VIBF1 (Glycine dehydrogenase [decarboxylating] OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gcvP PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.277e-15
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 204
            +E G+  + NN L  APH    LM D+W  PY+RE A +P+S  + +K+WP   RVDNVYGDRNLIC+
Sbjct:  879 VEQGEWPLDNNPLVNAPHTQVDLMSDSWEHPYTREVACFPSSQSKDSKYWPTVNRVDNVYGDRNLICS 946          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_RHIEC (Glycine dehydrogenase [decarboxylating] OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=gcvP PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.277e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE+G+ D  NN LK APH    L+G+ W +PYSRE A +P    R  K+W    RVDNVYGDRNLICT  P
Sbjct:  876 IEDGRMDKTNNPLKNAPHTVEDLVGE-WDRPYSREQACFPPGAFRVDKYWSPVNRVDNVYGDRNLICTCPP 945          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_RHILW (Glycine dehydrogenase [decarboxylating] OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=gcvP PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.973e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE+G+ D  NN LK APH    L+G+ W +PYSRE A +P    R  K+W    RVDNVYGDRNLICT  P
Sbjct:  876 IEDGRMDKVNNPLKNAPHTVEDLVGE-WDRPYSREQACFPPGAFRVDKYWSPVNRVDNVYGDRNLICTCPP 945          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_RHIL3 (Glycine dehydrogenase [decarboxylating] OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=gcvP PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.973e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE+G+ D  NN LK APH    L+G+ W +PYSRE A +P    R  K+W    RVDNVYGDRNLICT  P
Sbjct:  876 IEDGRMDKVNNPLKNAPHTVEDLVGE-WDRPYSREQACFPPGAFRVDKYWSPVNRVDNVYGDRNLICTCPP 945          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_RHIE6 (Glycine dehydrogenase [decarboxylating] OS=Rhizobium etli (strain CIAT 652) GN=gcvP PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.973e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            IE+G+ D  NN LK APH    L+G+ W +PYSRE A +P    R  K+W    RVDNVYGDRNLICT  P
Sbjct:  876 IEDGRMDKINNPLKNAPHTVEDLVGE-WDRPYSREQACFPPGAFRVDKYWSPVNRVDNVYGDRNLICTCPP 945          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_PROMM (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain MIT 9313) GN=gcvP PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.973e-15
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 204
            IE+G+ D  NN L+ APH  + +  + W +PYSR  AA+P +  R +KFWPA  R+DN YGDRNL+C+
Sbjct:  877 IESGQIDPQNNPLRRAPHTLAAVTAEVWDRPYSRAEAAFPLAEQRQSKFWPAVSRIDNAYGDRNLLCS 944          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_PROM3 (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain MIT 9303) GN=gcvP PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.973e-15
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 204
            IE+G+ D  NN L+ APH  + +  + W +PYSR  AA+P +  R +KFWPA  R+DN YGDRNL+C+
Sbjct:  897 IESGQIDPQNNPLRRAPHTLAAVTAEVWDRPYSRAEAAFPLAEQRQSKFWPAVSRIDNAYGDRNLLCS 964          
BLAST of CK739543 vs. ExPASy Swiss-Prot
Match: GCSP_GRAFK (Glycine dehydrogenase [decarboxylating] OS=Gramella forsetii (strain KT0803) GN=gcvP PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.973e-15
Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 IENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 213
            I+    D  NNVLK APH   +L  D W  PYSRE AAYP   L   KFWP+  RVD  +GDRNL+CT  P
Sbjct:  872 IDEVSVDDSNNVLKNAPHTIHMLTSDEWKLPYSREKAAYPLDHLHDNKFWPSVRRVDEAFGDRNLMCTCPP 942          
The following BLAST results are available for this feature:
BLAST of CK739543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
GCSP1_PSEAE1.335e-1554.93Glycine dehydrogenase [decarboxylating] 1 OS=Pseud... [more]
GCSP_VIBFM2.277e-1551.47Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_VIBF12.277e-1551.47Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_RHIEC2.277e-1554.93Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_RHILW2.973e-1554.93Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_RHIL32.973e-1554.93Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_RHIE62.973e-1554.93Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_PROMM2.973e-1550.00Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP_PROM32.973e-1550.00Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP_GRAFK2.973e-1553.52Glycine dehydrogenase [decarboxylating] OS=Gramell... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739543 ID=CK739543; Name=CK739543; organism=Citrus sinensis; type=EST; length=352bp
ATTGAAAATGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCGCC
TCATCCACCATCTTTGCTCATGGGAGATACATGGACTAAACCATACTCTC
GAGAATATGCAGCCTATCCTGCTTCCTGGCTCCGGTTTGCTAAGTTCTGG
CCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATCTG
CACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCACTG
CTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAGCA
TGGAAAAATTTGGAATCATCAACACTTCCTGATTTGATTGTATATATGAA
TA
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