CK739544

Overview
NameCK739544
Unique NameCK739544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length350
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 2.950e-55
Identity = 101/116 (87.07%), Postives = 108/116 (93.10%), Query Frame = 3
Query:    3 TIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVD-DDNEGED 347
            TIKTKR +QFVDW PTGFKCGINYQPPTVVPGGDLA+VQRAVCMISN+TA+AEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +  + D  EGED
Sbjct:  334 TIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTESQEGDGEEGED 449          
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 2.950e-55
Identity = 101/116 (87.07%), Postives = 108/116 (93.10%), Query Frame = 3
Query:    3 TIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVD-DDNEGED 347
            TIKTKR +QFVDW PTGFKCGINYQPPTVVPGGDLA+VQRAVCMISN+TA+AEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +  + D  EGED
Sbjct:  334 TIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTESQEGDGEEGED 449          
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.853e-55
Identity = 100/115 (86.96%), Postives = 107/115 (93.04%), Query Frame = 3
Query:    6 IKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVD--DDNEGE 344
            IKTKR +QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM+SN TA+AEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+  +   D EGE
Sbjct:  335 IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESSEAGGDEEGE 449          
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA8_RAT (Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba8 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.853e-55
Identity = 95/115 (82.61%), Postives = 108/115 (93.91%), Query Frame = 3
Query:    6 IKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGEDY 350
            IKTKR +QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG D  +++NEGE++
Sbjct:  335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSFEEENEGEEF 449          
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.853e-55
Identity = 95/115 (82.61%), Postives = 108/115 (93.91%), Query Frame = 3
Query:    6 IKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGEDY 350
            IKTKR +QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG D  +++NEGE++
Sbjct:  335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSFEEENEGEEF 449          
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA8_HUMAN (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.853e-55
Identity = 95/115 (82.61%), Postives = 108/115 (93.91%), Query Frame = 3
Query:    6 IKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGEDY 350
            IKTKR +QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG D  +++NEGE++
Sbjct:  335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSFEEENEGEEF 449          
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.853e-55
Identity = 95/115 (82.61%), Postives = 108/115 (93.91%), Query Frame = 3
Query:    6 IKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGEDY 350
            IKTKR +QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG D  +++NEGE++
Sbjct:  335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSFEEENEGEEF 449          
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 5.032e-55
Identity = 98/114 (85.96%), Postives = 106/114 (92.98%), Query Frame = 3
Query:    3 TIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGE 344
            TIKTKR +QFVDWCPTGFKCGINYQPPTVVPGGDLA+V RAVCMISN+TA+AEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +  + + E E
Sbjct:  334 TIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIETAEGEGEEE 447          
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 5.032e-55
Identity = 100/110 (90.91%), Postives = 105/110 (95.45%), Query Frame = 3
Query:    3 TIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDD 332
            TIKTKR VQFVD CPTGFKCGINYQPP+VVPGGDLA+VQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLA LEK YEEVGA+G DD+
Sbjct:  334 TIKTKRTVQFVDXCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAXLEKXYEEVGAEGADDE 443          
BLAST of CK739544 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 8.583e-55
Identity = 98/112 (87.50%), Postives = 106/112 (94.64%), Query Frame = 3
Query:    3 TIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNE 338
            TIKTKR +QFVDW PTGFKCGINYQPPTVVPGGDLA+VQRAVCMI+N+TA+AEVF+RIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+  D + E
Sbjct:  334 TIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMIANSTAIAEVFARIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADMEGE 445          
The following BLAST results are available for this feature:
BLAST of CK739544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
TBA1_NAEGR2.950e-5587.07Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=... [more]
TBA13_NAEGR2.950e-5587.07Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB... [more]
TBAD_PHYPO3.853e-5586.96Tubulin alpha-1A chain OS=Physarum polycephalum GN... [more]
TBA8_RAT3.853e-5582.61Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA8_MOUSE3.853e-5582.61Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBA8_HUMAN3.853e-5582.61Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=... [more]
TBA8_BOVIN3.853e-5582.61Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 ... [more]
TBA_OXYGR5.032e-5585.96Tubulin alpha chain OS=Oxytricha granulifera PE=3 ... [more]
TBA_AVESA5.032e-5590.91Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 S... [more]
TBA_TRYCR8.583e-5587.50Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6382 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739544 ID=CK739544; Name=CK739544; organism=Citrus sinensis; type=EST; length=350bp
CCACCATCAAGACGAAGCGGGCAGTTCAGTTTGTTGATTGGTGTCCAACT
GGTTTCAAATGTGGTATCAACTACCAGCCACCGACAGTGGTACCAGGGGG
TGATCTTGCTAGAGTTCAGCGTGCAGTTTGTATGATAAGCAACAACACAG
CTGTGGCTGAGGTTTTCTCCCGAATTGACCATAAATTTGATCTCATGTAT
TCCAAGCGAGCATTCGTTCACTGGTATGTAGGTGAGGGCATGGAGGAAGG
TGAATTCTCAGAAGCTCGAGAAGACCTTGCTGCTCTTGAGAAAGACTATG
AGGAAGTTGGGGCAGACGGTGTTGATGATGACAATGAGGGAGAAGATTAC
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