CK739562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_IGNH4 (30S ribosomal protein S4P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4p PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 5.613e-22 Identity = 57/116 (49.14%), Postives = 80/116 (68.97%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K + P P+ KERL E++L+GEYGLR KRE+W L R R+ AR+LL L + + E +ALL+R++ G ++E+ LD VL+LTV + LERRLQT+V+K G+AKSI+HA Sbjct: 9 KKWSPPGHPWVKERLIEEMKLMGEYGLRNKREIWIAAAMLRRYRHRARELLALPAEVREK--EEKALLKRLYDLGLVDENAT-LDDVLSLTVRDLLERRLQTVVYKKGLAKSIYHA 121
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_THEAC (30S ribosomal protein S4P OS=Thermoplasma acidophilum GN=rps4p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 8.106e-21 Identity = 54/119 (45.38%), Postives = 82/119 (68.91%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K + PR P+EKER+D E ++V +YGL+ K+E+WR + LS IR+ ARDL L ++ N ++ + E +++R++RY L E+ LD VL+LTVEN L+RRLQT+VF+ +A S+ A Sbjct: 9 KKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARLRTNDVNAQK--QLERMIKRLNRYKLLSENAT-LDDVLSLTVENILDRRLQTIVFRKNLAISVRQA 124
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS9_ENCCU (40S ribosomal protein S9 OS=Encephalitozoon cuniculi GN=RPS9 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 3.080e-20 Identity = 58/125 (46.40%), Postives = 77/125 (61.60%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFL--------EESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K PR P+EKERL E +LVG YGL+ K ELW ++ ++ + AR LLT NP I G +LLRR+ +YG L +E N L+ VL LT+ ++LERRLQ VF +G+AKS+HHA Sbjct: 8 KRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHA 130
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_HYPBU (30S ribosomal protein S4P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 3.080e-20 Identity = 56/116 (48.28%), Postives = 76/116 (65.52%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K + P+ P+ KERL EL LVG YGLR KRELW+++ R+ AR LL L + + E +ALL R++ G L E+ LD VL LT E+FLERRLQT+V+K G+A++I+ A Sbjct: 9 KKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPPEVREK--EEKALLARLNELGVLPENAT-LDDVLNLTAEHFLERRLQTIVYKKGLARTIYEA 121
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_THEPD (30S ribosomal protein S4P OS=Thermofilum pendens (strain Hrk 5) GN=rps4p PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.962e-20 Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K ++ P P+ KE L E++LVGEYGLR KRELW + L IR AR LL L + RI + L+ R+++ G L LD VL+LTV + LERRLQT+V++ G+A +I HA Sbjct: 9 KKWQGPSHPWRKETLLEEMQLVGEYGLRNKRELWIAKSLLREIRAKARKLLALPAE--ERIKLEKPLVSRLYKMGLLPSEDASLDDVLSLTVRDVLERRLQTIVYRKGLATTIRHA 122
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METKA (30S ribosomal protein S4P OS=Methanopyrus kandleri GN=rps4p PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.962e-20 Identity = 51/114 (44.74%), Postives = 77/114 (67.54%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNK--LDYVLALTVENFLERRLQTLVFKSGMAKS 365 K ++ PR P+E ERL+ E +L+ +YGLR K+ELWR Q L R R A++L+ + +R E EAL R+++ G L++ + LD +L LTVE+ LERRLQT+V++ G+AK+ Sbjct: 9 KKYETPRHPWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKELMARTDPEAQR--EREALFRKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKT 120
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_SULAC (30S ribosomal protein S4P OS=Sulfolobus acidocaldarius GN=rps4p PE=3 SV=3) HSP 1 Score: 93.2041 bits (230), Expect = 4.448e-19 Identity = 51/122 (41.80%), Postives = 77/122 (63.11%), Query Frame = 3 Query: 18 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD--EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 R K + P P+ K L E L+G+YGLR K+E+W Q + R+ AR LL L E+N R + L+++++R G LE+ + LD +L+LT EN+LERRLQT+V+K G+A++I+ A Sbjct: 5 RKSKKKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAERNIRE----KQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQA 122
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METB6 (30S ribosomal protein S4P OS=Methanoregula boonei (strain 6A8) GN=rps4p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.448e-19 Identity = 54/115 (46.96%), Postives = 75/115 (65.22%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL-DEKNPRRIFEGE--ALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 365 K+++ P+RP+EK R++ E RLV EYGLR KRE+W+ Q L + R AAR+LL L + +FE + L+ M R G L + +D VLAL V LERRLQTLV++ G+A+S Sbjct: 9 KSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGPDAD-IDNVLALKVPAQLERRLQTLVYRKGLARS 122
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 7.587e-19 Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 3 Query: 42 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ LD +L+L V LERRLQTLVF+ G+AKSIHHA Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWIVRRARALLSMTAEERAPLEV----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHA 124
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.908e-19 Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = 3 Query: 42 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ +LD +L+L V LERRLQT+V++ G+AKSIHHA Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHA 124 The following BLAST results are available for this feature:
BLAST of CK739562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739562 ID=CK739562; Name=CK739562; organism=Citrus sinensis; type=EST; length=377bpback to top |