CK739562

Overview
NameCK739562
Unique NameCK739562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METST (30S ribosomal protein S4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.792e-13
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K +  P  P+  +R+  E RL  +YGL+ K+E+W+ +  + R R  AR +L +D     R  + + LL  + R GF+  +  KL+ VL L VE+ L RRLQ+LVFK G++ +   A
Sbjct:    9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMD--IDERADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEA 121          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METS3 (30S ribosomal protein S4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.087e-12
Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = 3
Query:   18 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 365
            R   K +  P  P+  ER+  E +L+ +YGL+ K+E+W+    + R    AR LL  D    +   E   LL  + R G L E    L+ VL LTVE+ L RRLQT+V+K G+A++
Sbjct:    5 RKSRKKYNTPPHPWNAERIKNENKLMTKYGLKNKKEIWKADTLVRRYSREARYLLGFDMDQMQD--EKLELLGHLARTGVLPEGA-ALEEVLNLTVEDILRRRLQTIVYKKGLART 117          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_NATPD (30S ribosomal protein S4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE-GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  P++ ER+  E  L+  YGL  K ELWR Q  L   R  AR L+   + +     E G   L R+ R G L++ ++ LD +L+L V + LERRLQT+ ++ G+  +   A
Sbjct:    8 KFYETPNHPFQGERIAEEGDLLSRYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGVLDD-EDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQA 123          
The following BLAST results are available for this feature:
BLAST of CK739562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS4_METST2.792e-1337.0730S ribosomal protein S4P OS=Methanosphaera stadtm... [more]
RS4_METS33.087e-1237.9330S ribosomal protein S4P OS=Methanobrevibacter sm... [more]
RS4_NATPD6.878e-1235.9030S ribosomal protein S4P OS=Natronomonas pharaoni... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5949 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739562 ID=CK739562; Name=CK739562; organism=Citrus sinensis; type=EST; length=377bp
TGCACGTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGA
CGTCCCTATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGA
GTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGA
GCCGCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAAC
CCACGTCGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTA
CGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCA
CTGTGGAGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGT
GGCATGGCTAAGTCAATTCACCATGCT
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