CK739565

Overview
NameCK739565
Unique NameCK739565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_ULVAR (Plastocyanin OS=Ulva arasakii GN=PETE PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.932e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 2
Query:  251 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            V LGGDDG+LAFVPS  SV++GE I F NNAGFPHN+VFDED +P
Sbjct:    4 VKLGGDDGALAFVPSKISVAAGEAIEFVNNAGFPHNIVFDEDAVP 48          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_ENTPR (Plastocyanin OS=Enteromorpha prolifera GN=PETE PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.759e-13
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2
Query:  251 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            V LGGDDGSLAFVP++ +V +GE I F NNAGFPHN+VFDED +P
Sbjct:    4 VKLGGDDGSLAFVPNNITVGAGESIEFINNAGFPHNIVFDEDAVP 48          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_CHLRE (Plastocyanin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETE PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.799e-12
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 2
Query:  251 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            V LG D G+L FVP + ++ SGE + F NNAGFPHN+VFDED IP
Sbjct:   51 VKLGADSGALEFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAIP 95          

HSP 2 Score: 25.7942 bits (55), Expect = 5.799e-12
Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  384 PSGVDVSKISMSTEDLLNGPGET 452
            PSGV+   IS   +D LN PGET
Sbjct:   95 PSGVNADAISR--DDYLNAPGET 115          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_CHLFU (Plastocyanin OS=Chlorella fusca GN=petE PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.335e-11
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 2
Query:  245 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            + V LG D G+L F PSS ++ +GE + + NNAGFPHN+VFDEDE+P
Sbjct:    2 VTVKLGADSGALVFEPSSVTIKAGETVTWVNNAGFPHNIVFDEDEVP 48          

HSP 2 Score: 23.483 bits (49), Expect = 1.335e-11
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  384 PSGVDVSKISMSTEDLLNGPGET 452
            PSG +    ++S ED LN PGE+
Sbjct:   48 PSGANAE--ALSHEDYLNAPGES 68          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_SCEOB (Plastocyanin, chloroplastic OS=Scenedesmus obliquus GN=PETE PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 2.142e-11
Identity = 35/99 (35.35%), Postives = 50/99 (50.51%), Query Frame = 2
Query:   89 KAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            KA   PA+   +T+KASAS          L+ V                     V LG D G+L F P++ ++ +G+ + + NNAGFPHN+VFDED +P
Sbjct:    7 KAAVAPAKATRTTVKASAS----------LQRVAQAAGVAVAGFSLALSANAANVKLGADSGALVFEPATVTIKAGDSVTWTNNAGFPHNIVFDEDAVP 95          

HSP 2 Score: 22.7126 bits (47), Expect = 2.142e-11
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 3
Query:  384 PSGVDVSKISMSTEDLLNGPGET 452
            P+GV+    ++S +D LN PGE+
Sbjct:   95 PAGVNAD--ALSHDDYLNAPGES 115          
The following BLAST results are available for this feature:
BLAST of CK739565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PLAS_ULVAR3.932e-1373.33Plastocyanin OS=Ulva arasakii GN=PETE PE=1 SV=1[more]
PLAS_ENTPR8.759e-1371.11Plastocyanin OS=Enteromorpha prolifera GN=PETE PE=... [more]
PLAS_CHLRE5.799e-1262.22Plastocyanin, chloroplastic OS=Chlamydomonas reinh... [more]
PLAS_CHLFU1.335e-1157.45Plastocyanin OS=Chlorella fusca GN=petE PE=1 SV=1[more]
PLAS_SCEOB2.142e-1135.35Plastocyanin, chloroplastic OS=Scenedesmus obliquu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5952 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739565 ID=CK739565; Name=CK739565; organism=Citrus sinensis; type=EST; length=477bp
AAAAGAAAAAACAGCAGAACCCCATTTACAGTTACAATGGCTACTGTCAC
CTCTGCAGCTGTCACCGTCCCAACTTTTCACCGGCCTTAAAGCCGGTGCA
ACACCAGCCAGAGTTGTTGGTTCCACCATGAAGGCCTCAGCCTCTGCTGT
CCCAAAGCTCAGCATCAAGGCCACACTCAAAGATGTTGGAGTGGCCGTTG
CGGCCACAGCTGCCAGCGCAATGCTTGCTAGCAATGCCATGGCCATTGAG
GTTTTGCTTGGTGGTGATGATGGGTCCTTGGCTTTTGTTCCAAGCTCTTT
CTCTGTCAGCTCCGGTGAAAAGATTGTGTTCAAGAACAATGCTGGGTTCC
CACACAACGTTGTTTTCGATGAAGATGAGATTCCCGAGTGGTGTTGATGT
TTCAAAAATCTCCATGTCTACAGAAGACCTTCTCAATGGTCCTGGAGAGA
CTTTATGCTGTTACTCTGACTGAAAAG
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