CK739569

Overview
NameCK739569
Unique NameCK739569
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739569 vs. ExPASy Swiss-Prot
Match: RL37_BOVIN (60S ribosomal protein L37 OS=Bos taurus GN=RPL37 PE=3 SV=4)

HSP 1 Score: 131.339 bits (329), Expect = 3.054e-30
Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 3
Query:   48 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 293
            M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of CK739569 vs. ExPASy Swiss-Prot
Match: RL37_ICTPU (60S ribosomal protein L37 OS=Ictalurus punctatus GN=rpl37 PE=3 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 3.989e-30
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 3
Query:   48 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 293
            M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+++ V RRF++GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTGTGRMRHMKVVFRRFRNGFREGT 82          
BLAST of CK739569 vs. ExPASy Swiss-Prot
Match: RL37_EMENI (60S ribosomal protein L37 OS=Emericella nidulans GN=rpl37 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.377e-29
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 3
Query:   48 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 293
            M KGT SFGKR NKTHTLC RCGRRS+H+QKS CA C YPAA+ R YNWS KA RRKTTG+GR  +LR V RRFK+GF+ GT
Sbjct:    1 MTKGTSSFGKRHNKTHTLCRRCGRRSYHIQKSTCANCGYPAAKTRKYNWSEKAKRRKTTGSGRTAHLRDVHRRFKNGFQVGT 82          
BLAST of CK739569 vs. ExPASy Swiss-Prot
Match: RL37_DEBHA (60S ribosomal protein L37 OS=Debaryomyces hansenii GN=RPL37 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.189e-28
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 3
Query:   48 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 290
            M KGT S GKR NK+H LC RCG+RSFH+QK  CA+C YPAA+ R++NW+ KA RR+TTGTGRM YL+HV RRFK+GF+ G
Sbjct:    1 MSKGTPSLGKRHNKSHVLCNRCGKRSFHVQKKTCASCGYPAAKLRSHNWATKAKRRRTTGTGRMAYLKHVSRRFKNGFQTG 81          
BLAST of CK739569 vs. ExPASy Swiss-Prot
Match: RL37B_SCHPO (60S ribosomal protein L37-B OS=Schizosaccharomyces pombe GN=rpl37b PE=1 SV=4)

HSP 1 Score: 124.79 bits (312), Expect = 2.859e-28
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 3
Query:   48 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 290
            M KGT SFG R NK+HT+C RCG+RSFH+QKS CA C YPAA+ R+YNW  KA RR+TTGTGRM YL+ V R FK+GFR G
Sbjct:    1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRSG 81          
BLAST of CK739569 vs. ExPASy Swiss-Prot
Match: RL37_CANAL (60S ribosomal protein L37 (Fragment) OS=Candida albicans GN=RPL37 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.734e-28
Identity = 53/79 (67.09%), Postives = 67/79 (84.81%), Query Frame = 3
Query:   54 KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 290
            +GT S GKR NK+HTLC RCGRRSFH+QK  C++C YPAA+ R++NW++KA RR+TTGTGRM YL+HV RRFK+GF+ G
Sbjct:    1 EGTPSLGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKMRSHNWALKAKRRRTTGTGRMAYLKHVTRRFKNGFQTG 79          
BLAST of CK739569 vs. ExPASy Swiss-Prot
Match: RL37A_SCHPO (60S ribosomal protein L37-A OS=Schizosaccharomyces pombe GN=rpl37a PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.734e-28
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 3
Query:   48 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 290
            M KGT SFG R NK+HT+C RCG+RSFH+QKS CA C YPAA+ R+YNW  KA RR+TTGTGRM YL+ V R FK+GFR G
Sbjct:    1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRAG 81          
BLAST of CK739569 vs. ExPASy Swiss-Prot
Match: RL37_DICDI (60S ribosomal protein L37 OS=Dictyostelium discoideum GN=rpl37 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.853e-27
Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 3
Query:   48 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 293
            M KGT SFG+R  K+HTLC RCG+ SFH+QK  CA+C YP+A+ R+YNWS+KA RRKTTGTGR RYL+ V +RF SGF+E +
Sbjct:    1 MTKGTFSFGRRHTKSHTLCRRCGKSSFHIQKKTCASCGYPSAKTRSYNWSIKAQRRKTTGTGRTRYLKTVHKRFNSGFKEAS 82          
BLAST of CK739569 vs. ExPASy Swiss-Prot
Match: RL37_SCHMA (60S ribosomal protein L37 OS=Schistosoma mansoni GN=RPL37 PE=3 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 2.420e-27
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 3
Query:   48 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 290
            M KGT SFGKR NK+HT C RCGR+S+H+QK  C++C YP+AR R YNWS KA RR+TTGTGRM +L+ V RRFK GFR G
Sbjct:    1 MTKGTTSFGKRHNKSHTQCRRCGRKSYHIQKKTCSSCGYPSARLRKYNWSEKAKRRRTTGTGRMLHLKRVHRRFKQGFRSG 81          
BLAST of CK739569 vs. ExPASy Swiss-Prot
Match: RL372_DROME (Probable 60S ribosomal protein L37-B OS=Drosophila melanogaster GN=RpL37b PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.391e-27
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   48 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 290
            M KGT SFGKR NKTHT+C RCG  S+HLQKS+C+ C YPAA+ R++NWS KA  RK  GTGRMRYL+++ RRF++G REG
Sbjct:    1 MTKGTTSFGKRHNKTHTICRRCGNSSYHLQKSKCSQCGYPAAKTRSFNWSRKAKGRKAQGTGRMRYLKNLRRRFRNGLREG 81          
The following BLAST results are available for this feature:
BLAST of CK739569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL37_BOVIN3.054e-3073.1760S ribosomal protein L37 OS=Bos taurus GN=RPL37 P... [more]
RL37_ICTPU3.989e-3071.9560S ribosomal protein L37 OS=Ictalurus punctatus G... [more]
RL37_EMENI3.377e-2971.9560S ribosomal protein L37 OS=Emericella nidulans G... [more]
RL37_DEBHA2.189e-2866.6760S ribosomal protein L37 OS=Debaryomyces hansenii... [more]
RL37B_SCHPO2.859e-2867.9060S ribosomal protein L37-B OS=Schizosaccharomyces... [more]
RL37_CANAL3.734e-2867.0960S ribosomal protein L37 (Fragment) OS=Candida al... [more]
RL37A_SCHPO3.734e-2867.9060S ribosomal protein L37-A OS=Schizosaccharomyces... [more]
RL37_DICDI1.853e-2764.6360S ribosomal protein L37 OS=Dictyostelium discoid... [more]
RL37_SCHMA2.420e-2766.6760S ribosomal protein L37 OS=Schistosoma mansoni G... [more]
RL372_DROME5.391e-2765.43Probable 60S ribosomal protein L37-B OS=Drosophila... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5956 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739569 ID=CK739569; Name=CK739569; organism=Citrus sinensis; type=EST; length=561bp
CGCTCTTCACTCATCAGAAGGCTTTCCTCTACTTCGCATACGCTTCAATG
GGTAAGGGCACAGGGAGTTTTGGTAAGAGGAGAAACAAGACGCACACTTT
GTGTGTGCGATGTGGCCGTCGCAGCTTCCATCTTCAGAAGAGTCGTTGCG
CTGCTTGTGCTTACCCCGCTGCTCGCAAGAGAACGTATAACTGGAGTGTG
AAGGCAATCCGAAGAAAGACCACTGGAACCGGCAGGATGAGGTATCTGCG
CCATGTCCCTCGCAGGTTCAAGAGCGGCTTCAGAGAAGGGACTCAGGCAG
CACCAAGGAAGAAGGGAGCAGCTGCCTCTGCTTAAGGAGTTGAAGGGTAA
TTTTGGGCGTGAATCAGCACCTCATTATAGATTTAGTCTTCTTTAATGTG
TGGAGACAAGATTCATGGGAACATAATTTTGAAAAAGGATGTTATTTGTT
TTTGTGCTTAGTTGTTTTCAATTATGATTACTATGTAGTCTTTTTCAATT
TTGGACAAGATGAATGAGTTTATTGTTGTTTGACCTCCCTTAAAAAAAAA
AAAAAAAAAAA
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