CK739584

Overview
NameCK739584
Unique NameCK739584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length354
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.584e-23
Identity = 48/110 (43.64%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   37 IFSIIAGVLAVDPDTLQDVCVADTSSGVKVN----GFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMI 354
            + +++A   A DP+ +QD CVA   +G + +    GF CK ++ + +DDFFFAGLA  G  +N  G+ +   NVE  P LNTLGV+++R+D   GG+NP H+HPRA E++
Sbjct:   25 VLAVLASTCAADPEPIQDFCVAVPRAGGEASPAYPGFPCKPASAVVSDDFFFAGLAAAGSTDNPFGASLKPGNVEAFPALNTLGVAINRVDLAPGGVNPLHSHPRAAELV 134          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.599e-23
Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   22 STYLLIFSIIAGVLA----VDPDTLQDVCVA------DTSSGV--KVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMI 354
            S  LL+ S    VLA     DP+ +QD CVA      D ++       GF CK ++ + +DDFFFAGLA     +N  G  VTAAN E  PGLNTLGVS+ R+D   GG+NP H+HPRATE+I
Sbjct:    6 SAPLLVLSAALAVLASTCIADPEPVQDFCVAVVPRAGDAAAAACPAYPGFPCKPASTVVSDDFFFAGLAVASDTDNRFGFNVTAANAETFPGLNTLGVSIGRVDLAPGGVNPLHSHPRATELI 128          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.123e-22
Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 1
Query:   31 LLIFSIIAG-----VLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSL-----VTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATE 348
            LL+ ++ AG     V+A DP+ LQD CVAD +S V+VNG  CKD A +TADDFFF+G+ +P        +       TA +V+ IPGLNTLG S +R+D   GG+ PPH HPRA+E
Sbjct:   12 LLLVTLAAGHGVVVVVAFDPNPLQDFCVADPTSKVRVNGLPCKDPAAVTADDFFFSGVGEPAAGGGRGATASRRYGFTARSVD-IPGLNTLGASAARVDVAPGGVFPPHYHPRASE 126          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GL13_ARATH (Germin-like protein subfamily 1 member 3 OS=Arabidopsis thaliana GN=At3g04170 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.467e-22
Identity = 56/100 (56.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   58 VLAVDPDTLQDVCVA-DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMI 354
            V   DP  LQD CVA    +GV VNG  CKD   +T+DDFF +GL  PG  N  +GS V  AN   IPGLNTLGV ++RID+  GGL PPH HPRA+E+I
Sbjct:   22 VSCYDPSPLQDYCVAVPEKNGVFVNGEFCKDPKLVTSDDFFASGLNIPGNTNKRLGSFVNPAN---IPGLNTLGVGIARIDFAPGGLIPPHIHPRASEII 118          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GL12_ARATH (Putative germin-like protein subfamily 1 member 2 OS=Arabidopsis thaliana GN=At3g04150 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.467e-22
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   34 LIFSIIAGVLA------VDPDTLQDVCVADTSSG-VKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMI 354
            L+  II  VLA       DP+ LQD CVA   +  V VNG  CKD   +TA+DFF++GL  PG  +N +G+ VT  +V +IPGLNTLG++++R+D+  GG  PPH HPRA+++I
Sbjct:    8 LVAKIILLVLASTFVHCYDPNPLQDYCVATNGTNRVFVNGKFCKDPKLVTANDFFYSGLNIPGNTSNRLGASVTDVDVRRIPGLNTLGIAIARLDFAPGGQLPPHIHPRASQII 121          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.916e-22
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   16 LFSTYLLIFSI-IAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEM 351
            L  ++LL+F + +   L+ D D LQD CV D  +   +NGF CK +  ++A DFF++GL  P   +N  G  V  ANV   PGLNTLG+S++ ++   GG+NPPH HPRATE+
Sbjct:   10 LLRSFLLMFCLFVIPSLSSDSDPLQDFCVGDLKASASINGFPCKSA--VSASDFFYSGLGGPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEV 120          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: OXO2_HORVU (Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.502e-22
Identity = 57/117 (48.72%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    4 MAINLFSTYLLIFSIIAGVLAVDPDTLQDVCVADTSS-GVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEM 351
            +A++LF+  LL       VLA DPD LQD CVAD     V VNG  CK  +    D  F + LAK G  +   GS VT  +V + PG NTLGVS++R+D+  GG NPPH HPRATE+
Sbjct:    7 LAVSLFAVLLLA----PAVLASDPDPLQDFCVADLDGKAVSVNGHPCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHVHPRATEI 119          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GL15_ARATH (Germin-like protein subfamily 1 member 5 OS=Arabidopsis thaliana GN=At3g04190 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.267e-22
Identity = 51/113 (45.13%), Postives = 74/113 (65.49%), Query Frame = 1
Query:   16 LFSTYLLIFSIIAGVLAVDPDTLQDVCVA-DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEM 351
            L +  +L+    + V   +P  LQD CVA + ++GV VNG  CKD   +TA+DF+ +GL  PG  +   G  +T  +V+++PGLNTLGV ++RID+  GGL PPHTHPR +E+
Sbjct:    8 LLAKIILLALASSFVYCYEPSPLQDYCVATNETNGVYVNGKFCKDPKCVTANDFYTSGLNVPGNTSTGPGVKITVVDVKRMPGLNTLGVDIARIDFAPGGLYPPHTHPRGSEI 120          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.118e-21
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   16 LFSTYLLIFSIIAGVLAVDPDTLQDVCVA-DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEM 351
            L +  +L+    + V   DP  LQD CVA + ++GV VNG  CKD   +T +DF+ +GL  PG      G+  T  +VE++PGLNTLGV ++R D+  GGL+PPHTHPR +++
Sbjct:    8 LLAKIILLALASSFVYCYDPSPLQDYCVATNETNGVYVNGEFCKDPKRVTTNDFYTSGLNVPGNTIIGPGARNTVVDVERLPGLNTLGVDIARYDFAPGGLDPPHTHPRGSQI 120          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GER2_WHEAT (Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.118e-21
Identity = 56/117 (47.86%), Postives = 68/117 (58.12%), Query Frame = 1
Query:    4 MAINLFSTYLLIFSIIAGVLAVDPDTLQDVCVADTSS-GVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEM 351
            +   LF+  LL       VLA DPD LQD CVAD     V VNG  CK  +    D  F + LAK G  +   GS VT  +V + PG NTLGVS++R+D+  GG NPPH HPRATE+
Sbjct:    7 LVAGLFAMLLLA----PAVLATDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEI 119          
The following BLAST results are available for this feature:
BLAST of CK739584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GL37_ORYSJ6.584e-2343.64Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]
GL38_ORYSJ8.599e-2347.97Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GL51_ORYSJ1.123e-2249.14Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL13_ARATH1.467e-2256.00Germin-like protein subfamily 1 member 3 OS=Arabid... [more]
GL12_ARATH1.467e-2248.25Putative germin-like protein subfamily 1 member 2 ... [more]
GLT1_ARATH1.916e-2245.13Germin-like protein subfamily T member 1 OS=Arabid... [more]
OXO2_HORVU2.502e-2248.72Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1[more]
GL15_ARATH3.267e-2245.13Germin-like protein subfamily 1 member 5 OS=Arabid... [more]
GL14_ARATH2.118e-2144.25Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GER2_WHEAT2.118e-2147.86Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5971 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739584 ID=CK739584; Name=CK739584; organism=Citrus sinensis; type=EST; length=354bp
ATTATGGCTATCAATCTTTTCAGCACATACTTGCTTATTTTCAGCATCAT
AGCTGGAGTCCTTGCAGTCGATCCTGACACGCTCCAGGATGTTTGTGTGG
CCGACACCTCTTCAGGAGTCAAGGTGAACGGCTTTGCATGCAAAGATAGC
GCAAATATTACAGCAGATGATTTCTTCTTTGCTGGCCTAGCCAAGCCAGG
AGTAGTTAACAATTCAGTGGGATCGCTTGTAACGGCCGCCAATGTTGAAA
AAATTCCAGGCCTCAACACACTAGGCGTGTCCCTGTCCCGCATCGACTAC
GAAGCCGGTGGCCTGAACCCACCTCACACTCACCCACGTGCCACCGAAAT
GATC
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