CK739603

Overview
NameCK739603
Unique NameCK739603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739603 vs. ExPASy Swiss-Prot
Match: GSTF3_MAIZE (Glutathione S-transferase 3 OS=Zea mays GN=GST3 PE=1 SV=4)

HSP 1 Score: 54.299 bits (129), Expect = 1.276e-14
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 3
Query:   27 APLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEA 194
            A L VW EVE+  F P +S L ++L+ +P+ G   D A VE++  +LAK+LDVYEA
Sbjct:   94 AKLEVWLEVESHHFHPNASPLVFQLLVRPLLGGAPDAAVVEKHAEQLAKVLDVYEA 149          

HSP 2 Score: 45.4394 bits (106), Expect = 1.276e-14
Identity = 26/62 (41.94%), Postives = 35/62 (56.45%), Query Frame = 1
Query:  199 LSQSKYLACDSFTLVDLHHLPNINLLVGTPVKK-LFDARPHVSAWAADITSRPAWAKVLALL 381
            L+++KYLA D FTL D +H     L    P +     ARPHV AW   I +RPA+ K +A +
Sbjct:  151 LARNKYLAGDEFTLADANHALLPALTSARPPRPGCVAARPHVKAWWEAIAARPAFQKTVAAI 212          
BLAST of CK739603 vs. ExPASy Swiss-Prot
Match: GSTF4_MAIZE (Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE=1 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 8.402e-13
Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 3
Query:   39 VWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEA 194
            VW EVEA Q  PP+  +  E V+ P  G   + A V+EN  KL K+L+VYEA
Sbjct:   99 VWLEVEAHQLSPPAIAIVVECVFAPFLGRERNQAVVDENVEKLKKVLEVYEA 150          

HSP 2 Score: 42.3578 bits (98), Expect = 8.402e-13
Identity = 24/58 (41.38%), Postives = 31/58 (53.45%), Query Frame = 1
Query:  196 RLSQSKYLACDSFTLVDLHHLPNINLLVGTPVKKLFDARPHVSAWAADITSRPAWAKV 369
            RL+   YLA D  +L DL     ++ L+ T    L  A PHVSAW   + +RPA  KV
Sbjct:  151 RLATCTYLAGDFLSLADLSPFTIMHCLMATEYAALVHALPHVSAWWQGLAARPAANKV 208          
BLAST of CK739603 vs. ExPASy Swiss-Prot
Match: GSTF1_WHEAT (Glutathione S-transferase 1 OS=Triticum aestivum GN=GSTA1 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 9.241e-11
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1
Query:  196 RLSQSKYLACDSFTLVDLHHLPNINLLVGTPVKKLFDARPHVSAWAADITSRPAWAKV 369
            RL +S+YLA DS T  DL+H+P     + TP  K+FD  P V AW   + +RPA  +V
Sbjct:  158 RLEKSRYLAGDSITFADLNHIPFTFYFMTTPYAKVFDDYPKVKAWWEMLMARPAVQRV 215          

HSP 2 Score: 34.2686 bits (77), Expect = 9.241e-11
Identity = 20/61 (32.79%), Postives = 32/61 (52.46%), Query Frame = 3
Query:   24 IAPLLVWKEVEALQFDPPSSKLNWELVYKPMF----GMTTDPAAVEENEAKLAKILDVYEA 194
            +A + VW EVEA Q+ P  S + +E +  P      G   +   V+E+  +L  +L +YEA
Sbjct:   97 LAMVDVWTEVEAQQYYPAISPVVFECIIIPFIIPGGGAAPNQTVVDESLERLRGVLGIYEA 157          
The following BLAST results are available for this feature:
BLAST of CK739603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
GSTF3_MAIZE1.276e-1448.21Glutathione S-transferase 3 OS=Zea mays GN=GST3 PE... [more]
GSTF4_MAIZE8.402e-1348.08Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE... [more]
GSTF1_WHEAT9.241e-1144.83Glutathione S-transferase 1 OS=Triticum aestivum G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5990 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739603 ID=CK739603; Name=CK739603; organism=Citrus sinensis; type=EST; length=403bp
AGTTAACATGCCCAGGCAAGCCCATCGCCCCGTTATTGGTATGGAAGGAG
GTGGAGGCACTCCAGTTCGACCCCCCATCATCGAAGCTCAACTGGGAGCT
CGTGTACAAGCCAATGTTTGGAATGACCACTGATCCAGCTGCGGTTGAAG
AAAATGAAGCTAAGCTTGCCAAAATTTTAGATGTTTACGAGGCCCCGTTT
GTCTCAGTCCAAATACTTGGCGTGCGACAGCTTCACCTTGGTCGATTTGC
ATCATCTCCCCAATATTAATTTGTTGGTGGGGACGCCTGTCAAGAAGCTG
TTTGATGCACGCCCCCATGTTAGCGCATGGGCAGCTGATATCACTTCCAG
ACCGGCTTGGGCTAAGGTCCTTGCCTTGCTCAAACACTGAACACTCTGCC
CGC
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