CK739608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 2.929e-39 Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 3 Query: 3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 293 LGNPSLIHAQ+I+A A QVVLMG VEGYR+ GGP GE DPLYPG +FDPLGLADDP+ FAELKVKEIKNGRLAMF+ GFFVQAIVTGKGP+ENL Sbjct: 155 LGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENL 251
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 1.152e-35 Identity = 80/99 (80.81%), Postives = 85/99 (85.86%), Query Frame = 3 Query: 3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 293 LGNP+L+HAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL Sbjct: 145 LGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 1.663e-34 Identity = 78/99 (78.79%), Postives = 84/99 (84.85%), Query Frame = 3 Query: 3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 293 LGNP+L+HAQSILA+ QV+LMG VEG+RI G +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL Sbjct: 148 LGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 8.254e-34 Identity = 74/99 (74.75%), Postives = 79/99 (79.80%), Query Frame = 3 Query: 3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 293 LGN SLIHAQSI+A A QVVLMG E YR GG G + D LYPGG FDPLGLADDP+ FAELKVKEIKNGRLAMFS GFFVQAIVTGKGP++NL Sbjct: 132 LGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNL 230
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 8.542e-31 Identity = 68/95 (71.58%), Postives = 76/95 (80.00%), Query Frame = 3 Query: 15 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 290 +LIHA+S+LAI A QV+LMGAVEGYR A G GE D LYPGG FDPLGLADDP+ F ELKVKEIKNGRLAM M GF+ QAIVTG+GP+EN Sbjct: 4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVEN 98
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 1.081e-25 Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 3 Query: 3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 185 LGNP+L+HAQSILAIWACQVVLMGAVEGYR+ GGPLGE D LYPGG+FDPLGLA+DPEAF Sbjct: 145 LGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.253e-23 Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 3 Query: 36 ILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAR 299 +LA+ A +VVL+G E YRI G + D L+PGG FDPLGLA DPE A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA+ Sbjct: 172 VLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAK 256
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.912e-14 Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 3 Query: 108 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 293 LG DP YPGG F+PLG D ++ ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL Sbjct: 192 LGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNL 254
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13 Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 3 Query: 132 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLA 296 YPGG+FDPLG + DP F ELK+KEIKNGRLAM + GF V Q+ G GPLENLA Sbjct: 167 YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLA 222
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13 Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 3 Query: 132 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLA 296 YPGG+FDPLG + DP F ELKVKEIKNGRLA+ ++ GF V Q+ G GPLENLA Sbjct: 168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLA 223 The following BLAST results are available for this feature:
BLAST of CK739608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739608 ID=CK739608; Name=CK739608; organism=Citrus sinensis; type=EST; length=302bpback to top |