CK739608

Overview
NameCK739608
Unique NameCK739608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.929e-39
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 3
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 293
            LGNPSLIHAQ+I+A  A QVVLMG VEGYR+ GGP GE  DPLYPG +FDPLGLADDP+ FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL
Sbjct:  155 LGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENL 251          
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.152e-35
Identity = 80/99 (80.81%), Postives = 85/99 (85.86%), Query Frame = 3
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 293
            LGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct:  145 LGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.663e-34
Identity = 78/99 (78.79%), Postives = 84/99 (84.85%), Query Frame = 3
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 293
            LGNP+L+HAQSILA+   QV+LMG VEG+RI G   +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct:  148 LGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245          
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.254e-34
Identity = 74/99 (74.75%), Postives = 79/99 (79.80%), Query Frame = 3
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 293
            LGN SLIHAQSI+A  A QVVLMG  E YR  GG  G  +  D LYPGG FDPLGLADDP+ FAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL
Sbjct:  132 LGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNL 230          
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.542e-31
Identity = 68/95 (71.58%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   15 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 290
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVEN 98          
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.081e-25
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 3
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 185
            LGNP+L+HAQSILAIWACQVVLMGAVEGYR+ GGPLGE  D LYPGG+FDPLGLA+DPEAF
Sbjct:  145 LGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.253e-23
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 3
Query:   36 ILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAR 299
            +LA+ A +VVL+G  E YRI  G   +  D L+PGG FDPLGLA DPE  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA+
Sbjct:  172 VLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAK 256          
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.912e-14
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 3
Query:  108 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 293
            LG   DP YPGG  F+PLG   D ++  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL
Sbjct:  192 LGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNL 254          
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 3
Query:  132 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLA 296
            YPGG+FDPLG + DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENLA
Sbjct:  167 YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLA 222          
BLAST of CK739608 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 3
Query:  132 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLA 296
            YPGG+FDPLG + DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA
Sbjct:  168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLA 223          
The following BLAST results are available for this feature:
BLAST of CK739608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB2_DUNSA2.929e-3980.41Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC1.152e-3580.81Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU1.663e-3478.79Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE8.254e-3474.75Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_EUGGR8.542e-3171.58Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_SILPR1.081e-2585.25Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB26_ARATH2.253e-2364.77Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB13_SOLLC1.912e-1458.73Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB121_HORVU1.618e-1366.07Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.618e-1366.07Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5995 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739608 ID=CK739608; Name=CK739608; organism=Citrus sinensis; type=EST; length=302bp
ACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGG
GCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGG
AGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTG
ATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTT
AAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTT
CGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCCGAC
CA
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