CK739609

Overview
NameCK739609
Unique NameCK739609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length240
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_XENLA (60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.599e-13
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   66 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            VGLNKGH VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KD
Sbjct:    9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKD 66          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_PONAB (60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.599e-13
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 3
Query:   66 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            VGLNKGH VTK    PR + R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KD
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKD 66          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_HUMAN (60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.599e-13
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 3
Query:   66 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            VGLNKGH VTK    PR + R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KD
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKD 66          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_LAPHA (60S ribosomal protein L36 OS=Lapemis hardwickii GN=RPL36 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.701e-13
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   66 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            VGLNKGH VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KD
Sbjct:    9 VGLNKGHKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKD 66          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_BOVIN (60S ribosomal protein L36 OS=Bos taurus GN=RPL36 PE=3 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 6.140e-13
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 3
Query:   66 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            VGLNKGH VTK    PR + R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KD
Sbjct:    9 VGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKD 66          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_RAT (60S ribosomal protein L36 OS=Rattus norvegicus GN=Rpl36 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.786e-12
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   66 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            VGLNKGH VTK    PR + R+G+ +K   FVR +IREV  FAPYE+R  ELLKV KD
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKD 66          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_DANRE (60S ribosomal protein L36 OS=Danio rerio GN=rpl36 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.333e-12
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   66 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            VGLNKGH VTK    P+ + R+G+ +K   F R +IREV GFAPYE+R  ELLKV KD
Sbjct:    9 VGLNKGHKVTKNVSKPKHSRRRGRLTKHAKFARDLIREVCGFAPYERRAMELLKVSKD 66          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_CHICK (60S ribosomal protein L36 OS=Gallus gallus GN=RPL36 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.333e-12
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   66 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            VGLNKG+ VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KD
Sbjct:    9 VGLNKGYKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKD 66          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_ICTPU (60S ribosomal protein L36 OS=Ictalurus punctatus GN=rpl36 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.512e-11
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 3
Query:   66 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            VGL KGH VTK    P+ + R G+ +K   FVR +IREV GFAPYE+R  ELLKV KD
Sbjct:    9 VGLKKGHPVTKNVTKPKHSRRGGRLTKHSKFVRDMIREVCGFAPYERRAMELLKVSKD 66          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_CAEEL (60S ribosomal protein L36 OS=Caenorhabditis elegans GN=rpl-36 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.579e-11
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 3
Query:   57 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            GL VGLNKGH  T+  +  R    KG  SK+   VR ++RE+ GFAPYE+R+ E+L++ KD
Sbjct:    8 GLAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKD 68          
The following BLAST results are available for this feature:
BLAST of CK739609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RL36_XENLA3.599e-1362.0760S ribosomal protein L36 OS=Xenopus laevis GN=rpl... [more]
RL36_PONAB3.599e-1362.0760S ribosomal protein L36 OS=Pongo abelii GN=RPL36... [more]
RL36_HUMAN3.599e-1362.0760S ribosomal protein L36 OS=Homo sapiens GN=RPL36... [more]
RL36_LAPHA4.701e-1362.0760S ribosomal protein L36 OS=Lapemis hardwickii GN... [more]
RL36_BOVIN6.140e-1362.0760S ribosomal protein L36 OS=Bos taurus GN=RPL36 P... [more]
RL36_RAT1.786e-1260.3460S ribosomal protein L36 OS=Rattus norvegicus GN=... [more]
RL36_DANRE2.333e-1258.6260S ribosomal protein L36 OS=Danio rerio GN=rpl36 ... [more]
RL36_CHICK2.333e-1260.3460S ribosomal protein L36 OS=Gallus gallus GN=RPL3... [more]
RL36_ICTPU1.512e-1158.6260S ribosomal protein L36 OS=Ictalurus punctatus G... [more]
RL36_CAEEL2.579e-1149.1860S ribosomal protein L36 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5996 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739609 ID=CK739609; Name=CK739609; organism=Citrus sinensis; type=EST; length=240bp
GTTTCCGCAGCAACTCAGTTTCGTCGGAGGTGATGGCTCCGAAACAGCCA
AATACTGGTCTCTTTGTTGGATTAAACAAGGGTCATATTGTGACGAAGAA
GGAACTGCCGCCACGCCCAGCAGATCGCAAAGGGAAAACAAGCAAAAGGG
TCCACTTCGTGAGGACTGTGATTAGGGAAGTTGCTGGCTTTGCACCCTAT
GAGAAAAGGATCACTGAGCTTCTTAAAGTCGGCAAGGACA
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