CK739643

Overview
NameCK739643
Unique NameCK739643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.987e-35
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKF
Sbjct:   72 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 115

HSP 2 Score: 77.411 bits (189), Expect = 2.987e-35
Identity = 35/62 (56.45%), Postives = 41/62 (66.13%), Query Frame = 3 
Query:  129 VADGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            +    + TMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDT    + P
Sbjct:   17 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 78
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.887e-35
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKF
Sbjct:   82 AGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125

HSP 2 Score: 81.2629 bits (199), Expect = 3.887e-35
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 3 
Query:  141 GRITMRRTVK-SAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            GR+TMR+TVK + P  S WYG DR KYLGPFS + PSYLTGEFPGDYGWDT    + P
Sbjct:   31 GRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 88
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.888e-35
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKF
Sbjct:   81 AGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 124

HSP 2 Score: 79.7221 bits (195), Expect = 3.888e-35
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 3 
Query:  108 SLSRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            +LS    V    R++MR+T  +    S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDT    + P
Sbjct:   20 NLSSSSEVQGDARVSMRKTAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADP 87
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.594e-35
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKF
Sbjct:   86 AGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 129

HSP 2 Score: 77.411 bits (189), Expect = 6.594e-35
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 3 
Query:  114 SRKVGVADGGRITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            S+++G A   R TMR++  +    +  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDT    + P
Sbjct:   27 SQELGAA---RFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADP 92
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.596e-35
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NG+KF
Sbjct:   84 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKF 127

HSP 2 Score: 81.2629 bits (199), Expect = 6.596e-35
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 3 
Query:  129 VADGGRITMRRTVKSAP----QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            +   G++TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFP DYGWDT    + P
Sbjct:   27 ITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADP 90
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.118e-34
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKF
Sbjct:   95 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 138

HSP 2 Score: 76.6406 bits (187), Expect = 1.118e-34
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  123 VGVADG-GRITMRRTV--KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDT    + P
Sbjct:   34 VGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 101
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.119e-34
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NGVKF
Sbjct:   84 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKF 127

HSP 2 Score: 80.1073 bits (196), Expect = 1.119e-34
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3 
Query:  129 VADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            +   G+ TMR+T   A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDT    + P
Sbjct:   27 ITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADP 90
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.456e-34
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKF
Sbjct:   95 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 138

HSP 2 Score: 76.2554 bits (186), Expect = 1.456e-34
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  123 VGVADG-GRITMRRTV--KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDT    + P
Sbjct:   34 VGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 101
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.457e-34
Identity = 43/68 (63.24%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  111 LSRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRP 308
            LSRKV      R+TMRRTV  +  S  IWYG DRPK+LGPFS +TPSYL GEF GDYGWDT    S P
Sbjct:   24 LSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDP 91

HSP 2 Score: 81.2629 bits (199), Expect = 1.457e-34
Identity = 36/44 (81.82%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            AGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+K+GVKF
Sbjct:   85 AGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 128
[Close]
BLAST of CK739643 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.458e-34
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:  289 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 420
            A LSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKF
Sbjct:   84 AELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127

HSP 2 Score: 81.2629 bits (199), Expect = 1.458e-34
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 3 
Query:  129 VADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDT 287
            +   G+ TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDT
Sbjct:   27 ITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDT 83
The following BLAST results are available for this feature:
BLAST of CK739643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB21_CUCSA2.987e-3595.45Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SINAL3.887e-3588.64Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_HORVU3.888e-3590.91Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_PEA6.594e-3593.18Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB23_PETSP6.596e-3586.36Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB2A_PYRPY1.118e-3493.18Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_PETSP1.119e-3488.64Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB2A_PINSY1.456e-3493.18Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB2_PHYPA1.457e-3463.24Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_PETSP1.458e-3488.64Chlorophyll a-b binding protein 91R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6030 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739643 ID=CK739643; Name=CK739643; organism=Citrus sinensis; type=EST; length=422bp
AGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATATGGCAA
CCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGCAA
TCCAATGAGTTTGTCCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCA
CCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCA
GACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTT
GACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCCGCTGGTTTATCA
GCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAG
CAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCT
CCAAGAATGGAGTGAAGTTCGG
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