CK739651

Overview
NameCK739651
Unique NameCK739651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.079e-47
Identity = 89/118 (75.42%), Postives = 102/118 (86.44%), Query Frame = 3
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 356
            LGNPSL+HAQ+I+A  A QV+LMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ FAELKVKEIKNGR+A FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  134 LGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.141e-45
Identity = 95/121 (78.51%), Postives = 102/121 (84.30%), Query Frame = 3
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 359
            LGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  145 LGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.794e-44
Identity = 92/121 (76.03%), Postives = 100/121 (82.64%), Query Frame = 3
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 359
            LGNP+L+HAQSILA+   QV+LMG VEG+RI G   +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  148 LGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 9.996e-42
Identity = 87/121 (71.90%), Postives = 94/121 (77.69%), Query Frame = 3
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 359
            LGN SLIHAQSI+A  A QVVLMG  E YR  GG  G  +  D LYPGG FDPLGLADDP+ FAELKVKEIKNGR+AMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  132 LGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 7.671e-34
Identity = 76/118 (64.41%), Postives = 86/118 (72.88%), Query Frame = 3
Query:   15 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 356
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKVKEIKNGR+AM  M GF+ QAIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.083e-27
Identity = 62/97 (63.92%), Postives = 74/97 (76.29%), Query Frame = 3
Query:   36 ILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 326
            +LA+ A +VVL+G  E YRI  G   +  D L+PGG FDPLGLA DPE  A LKVKEIKNGR+AMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  172 VLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.713e-25
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 3
Query:    3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 185
            LGNP+L+HAQSILAIWACQVVLMGAVEGYR+ GGPLGE  D LYPGG+FDPLGLA+DPEAF
Sbjct:  145 LGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.167e-20
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 3
Query:  108 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 326
            LG   DP YPGG  F+PLG   D ++  ELK+KEIKNGR+AM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  192 LGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.028e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 3
Query:  123 DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 326
            +P YPGG F +PLG   D ++  ELK+KE+KNGR+AM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  199 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.242e-17
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  132 YPGGSFDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 326
            YPGG+FDPLG + DP  F ELK+KEIKNGR+AM +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  167 YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
The following BLAST results are available for this feature:
BLAST of CK739651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB2_CHLRE2.079e-4775.42Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC1.141e-4578.51Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU4.794e-4476.03Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE9.996e-4271.90Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_EUGGR7.671e-3464.41Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB26_ARATH9.083e-2763.92Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_SILPR1.713e-2585.25Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB13_SOLLC2.167e-2062.16Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA2.028e-1857.97Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU2.242e-1765.15Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6038 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739651 ID=CK739651; Name=CK739651; organism=Citrus sinensis; type=EST; length=498bp
ACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGG
GCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGG
AGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTG
ATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTT
AAGGAAATCAAGAATGGAAGGGTGGCTATGTTCTCCATGTTTGGTTTCTT
CGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACC
ACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTT
GTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTT
CTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAG
TTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAAA
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