CK739651
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 2.079e-47 Identity = 89/118 (75.42%), Postives = 102/118 (86.44%), Query Frame = 3 Query: 3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 356 LGNPSL+HAQ+I+A A QV+LMG +EGYR+ GGP GE DPLYPG SFDPLGLADDP+ FAELKVKEIKNGR+A FSMFGFFVQAIVTGKGP++NL DHLA+P NNA+A+AT F P Sbjct: 134 LGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 1.141e-45 Identity = 95/121 (78.51%), Postives = 102/121 (84.30%), Query Frame = 3 Query: 3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 359 LGNP+L+HAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG Sbjct: 145 LGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 4.794e-44 Identity = 92/121 (76.03%), Postives = 100/121 (82.64%), Query Frame = 3 Query: 3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 359 LGNP+L+HAQSILA+ QV+LMG VEG+RI G +GE D LYPGG FDPLGLADDP FAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG Sbjct: 148 LGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 9.996e-42 Identity = 87/121 (71.90%), Postives = 94/121 (77.69%), Query Frame = 3 Query: 3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 359 LGN SLIHAQSI+A A QVVLMG E YR GG G + D LYPGG FDPLGLADDP+ FAELKVKEIKNGR+AMFS GFFVQAIVTGKGP++NL DHLADP N A+A AT F PG Sbjct: 132 LGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 7.671e-34 Identity = 76/118 (64.41%), Postives = 86/118 (72.88%), Query Frame = 3 Query: 15 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 356 +LIHA+S+LAI A QV+LMGAVEGYR A G GE D LYPGG FDPLGLADDP+ F ELKVKEIKNGR+AM M GF+ QAIVTG+GP+EN HL DP +N A T F P Sbjct: 4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 9.083e-27 Identity = 62/97 (63.92%), Postives = 74/97 (76.29%), Query Frame = 3 Query: 36 ILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 326 +LA+ A +VVL+G E YRI G + D L+PGG FDPLGLA DPE A LKVKEIKNGR+AMF+M GFF+QA VTG+GP+ENLA HL+DP NN Sbjct: 172 VLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 1.713e-25 Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 3 Query: 3 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 185 LGNP+L+HAQSILAIWACQVVLMGAVEGYR+ GGPLGE D LYPGG+FDPLGLA+DPEAF Sbjct: 145 LGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.167e-20 Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 3 Query: 108 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 326 LG DP YPGG F+PLG D ++ ELK+KEIKNGR+AM ++ G+F+QA+VTG GP +NL DHLADPVNNN Sbjct: 192 LGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 2.028e-18 Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 3 Query: 123 DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 326 +P YPGG F +PLG D ++ ELK+KE+KNGR+AM ++ G+F+Q +VTG GP +NL DH+ADPVNNN Sbjct: 199 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267
BLAST of CK739651 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.242e-17 Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 3 Query: 132 YPGGSFDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 326 YPGG+FDPLG + DP F ELK+KEIKNGR+AM + GF V Q+ G GPLENLA HLADP +NN Sbjct: 167 YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232 The following BLAST results are available for this feature:
BLAST of CK739651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739651 ID=CK739651; Name=CK739651; organism=Citrus sinensis; type=EST; length=498bpback to top |