CK739655

Overview
NameCK739655
Unique NameCK739655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.475e-52
Identity = 76/111 (68.47%), Postives = 83/111 (74.77%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YMTYMFKYDSVHGQWK  ELKVKD KTLLFG+KP+TVFGVRNPEE PW E GAEYVVESTGVFT               V+ISAPS +APMFVVGVNE EYK ++
Sbjct:   35 PFITTEYMTYMFKYDSVHGQWKKDELKVKDSKTLLFGDKPLTVFGVRNPEEDPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSGNAPMFVVGVNEKEYKKDI 145          

HSP 2 Score: 68.9366 bits (167), Expect = 2.475e-52
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            K+KIGINGFGRIGRLVARV L  DD+ELVAVNDPFITT
Sbjct:    2 KMKIGINGFGRIGRLVARVALMSDDIELVAVNDPFITT 39          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.153e-44
Identity = 61/110 (55.45%), Postives = 73/110 (66.36%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPE 433
            P   P+YMTYMFKYDS HGQWK  E+ +  +  L FG  PV V+  R+P EIPW + GA++VVESTGVFT               V+ISAPSKDAPMFV+GVNEN+Y  E
Sbjct:   39 PFITPEYMTYMFKYDSTHGQWKKTEVTLHSEGHLTFGGNPVAVYACRDPSEIPWGKHGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVMGVNENKYSDE 148          

HSP 2 Score: 70.0922 bits (170), Expect = 2.153e-44
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT 114
            K+K+GINGFGRIGRLVARV L+RDD+ELVA+NDPFIT
Sbjct:    6 KIKVGINGFGRIGRLVARVALERDDIELVAINDPFIT 42          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.257e-43
Identity = 87/128 (67.97%), Postives = 93/128 (72.66%), Query Frame = 2
Query:   53 QESSCRGTMLNSLLLMIPLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            Q   C    +N      P    DYMTYMFKYDSVHGQWKHHELKVKD+KTLLFGE+PVTVFG RNPEEIPW +TGA+YVVESTGVFT               VIISAPSKDAPMFVVGVNE+EYK EL
Sbjct:   24 QSDDCELVAIND-----PFITTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGERPVTVFGNRNPEEIPWGQTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKSEL 146          

HSP 2 Score: 72.0182 bits (175), Expect = 1.147e-12
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            KVKIGINGFGRIGRLVARVILQ DD ELVA+NDPFITT
Sbjct:    3 KVKIGINGFGRIGRLVARVILQSDDCELVAINDPFITT 40          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.897e-40
Identity = 79/111 (71.17%), Postives = 83/111 (74.77%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    DYMTYMFKYD+VHGQWKHHE+KVKD KTLLFGEK V VFG RNPEEIPWA  GAEYVVESTGVFT               VIISAPSKDAPMFV GVNE EYK ++
Sbjct:    4 PFITTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWAAAGAEYVVESTGVFTDKDKAAAHIKGGAKKVIISAPSKDAPMFVCGVNEKEYKSDI 114          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.518e-35
Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P   P+Y  YMFKYDS HG++K  E+  KDD  ++ G+  + VFG ++P  IPW + G +YV+ESTGVFT               VII+APS DAPMFVVGVNE +Y P+L
Sbjct:   35 PFIAPEYAAYMFKYDSTHGRYKG-EVTSKDDSLVIDGQS-IKVFGEKDPASIPWGKAGVDYVIESTGVFTTTEGAQKHIDGGAKKVIITAPSSDAPMFVVGVNEQKYTPDL 143          

HSP 2 Score: 58.5362 bits (140), Expect = 1.518e-35
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            + IGINGFGRIGRLV R+ LQR D+++VAVNDPFI
Sbjct:    3 ITIGINGFGRIGRLVLRIALQRSDIKVVAVNDPFI 37          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.693e-35
Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P   PDY  YMFKYDS HG++K  E+    D  ++ G K + VF  R+P  IPW ++G +YV+ESTGVFT               VII+APS DAPMFVVGVNE++Y P+L
Sbjct:   35 PFIAPDYAAYMFKYDSTHGRYKG-EVTASGDDLVIDGHK-IKVFQERDPANIPWGKSGVDYVIESTGVFTKVEGAQKHIDAGAKKVIITAPSADAPMFVVGVNEDKYTPDL 143          

HSP 2 Score: 59.6918 bits (143), Expect = 5.693e-35
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            +KIGINGFGRIGRLV RV L R D+E+VAVNDPFI
Sbjct:    3 IKIGINGFGRIGRLVLRVALGRKDIEVVAVNDPFI 37          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.413e-35
Identity = 60/110 (54.55%), Postives = 72/110 (65.45%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPE 433
            P    DYM YMFKYDS HG++K  +++ KD K ++ G KP++VFG R+P  IPW + GA+YVVESTGVFT               VIISAPS DAPMFV GVN   YKPE
Sbjct:   35 PFIDLDYMVYMFKYDSTHGRFKG-KVETKDGKLVIEG-KPISVFGERDPAAIPWGKAGADYVVESTGVFTTIEKASLHLKGGAKKVIISAPSADAPMFVCGVNLEAYKPE 142          

HSP 2 Score: 52.7582 bits (125), Expect = 7.413e-35
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 1
Query:   10 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            K+GINGFGRIGR+V R  L+  D+++VA+NDPFI
Sbjct:    4 KVGINGFGRIGRIVLRNALEHGDIDVVAINDPFI 37          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.414e-35
Identity = 59/111 (53.15%), Postives = 75/111 (67.57%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YM YMFK+DS HG++    ++ KD K ++ G K +T++G R+P EIPWAE GA+YVVESTGVFT               VIISAPSKDAPMFV GVNE++Y P+L
Sbjct:   36 PFIDLEYMAYMFKFDSTHGRYAG-SVETKDGKLIVNG-KSITIYGHRDPAEIPWAEAGADYVVESTGVFTLKEKAEKHFTGGAKKVIISAPSKDAPMFVCGVNEDKYTPDL 144          

HSP 2 Score: 51.6026 bits (122), Expect = 7.414e-35
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1
Query:   10 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            ++GINGFGRIGRLV R  +++D + +VA+NDPFI
Sbjct:    5 QVGINGFGRIGRLVLRAAIEKDTMSVVAINDPFI 38          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 4.714e-34
Identity = 59/110 (53.64%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPE 433
            P    DYM YMFKYDS HG++K   ++VKD K L    K + VFG ++P  I W E GAEYVVESTGVFT               V+ISAPS DAPMFV GVN + YKPE
Sbjct:   35 PFIDLDYMVYMFKYDSTHGRFKG-SVEVKDGK-LYINNKAIAVFGEKDPANIKWGEAGAEYVVESTGVFTTTEKAGVHLKGGAKKVVISAPSADAPMFVCGVNLDAYKPE 142          

HSP 2 Score: 54.299 bits (129), Expect = 4.714e-34
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            VK+GINGFGRIGR+V R  ++  D+E+VAVNDPFI
Sbjct:    3 VKVGINGFGRIGRIVLRNAIEHGDLEVVAVNDPFI 37          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.042e-33
Identity = 57/109 (52.29%), Postives = 70/109 (64.22%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKP 430
            P    DYM YMFK+DSVHG++K   ++ KD K ++ G KP+ VFG R+P  IPW  +GA+YVVESTGVFT               VIISAPS DAPM+V GVN + Y P
Sbjct:   35 PFIPLDYMVYMFKFDSVHGRYKG-TVEAKDGKLIIAG-KPIAVFGERDPASIPWGASGADYVVESTGVFTTIDKASAHLKGGAKKVIISAPSADAPMYVCGVNLDAYDP 141          

HSP 2 Score: 54.299 bits (129), Expect = 1.042e-33
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            VK+GINGFGRIGRLV R  L+   VE+VAVNDPFI
Sbjct:    3 VKVGINGFGRIGRLVIRNALEAQGVEVVAVNDPFI 37          
The following BLAST results are available for this feature:
BLAST of CK739655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
G3PC_PETCR2.475e-5268.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA2.153e-4455.45Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU1.257e-4367.97Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_HORVU2.897e-4071.17Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_DEBHA1.518e-3549.55Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_CANAL5.693e-3549.55Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P_CRYCU7.413e-3554.55Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3PC_GRAVE7.414e-3553.15Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CRYNE4.714e-3453.64Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_OMPOL1.042e-3352.29Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6042 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739655 ID=CK739655; Name=CK739655; organism=Citrus sinensis; type=EST; length=436bp
GGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTGGTAGGCTGGT
GGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTTGCTGTTAATG
ATCCCTTTATCACAACCCGATTACATGACATACATGTTTAAGTACGACAG
TGTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGGACGATAAGA
CCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCA
GAGGAGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTCGAC
TGGAGTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTG
CTAAGAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGTT
GTCGGTGTCAATGAAAACGAGTACAAACCAGAGCTC
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