CK739655

Overview
NameCK739655
Unique NameCK739655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.436e-12
Identity = 42/126 (33.33%), Postives = 67/126 (53.17%), Query Frame = 2
Query:   65 CRGTMLNSLLLMIPLSQPDYM---TYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNENEYK 427
            C  T  NSLL +I ++    +   +++ KYDS  G++   ++K+ DD  +    K + V   R+P ++PW E   + V+E TGVF                V+I+AP+K  D P +VVGVN ++YK
Sbjct:   13 CLETRQNSLLEVIAINDSGGVKQASHLLKYDSTLGKFDA-DVKIVDDGHISVNGKSIRVVSSRDPTKLPWGEMEIDLVIEGTGVFIDTPGASKHIEAGAKKVLITAPAKGSDIPTYVVGVNAHDYK 137          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 8.907e-12
Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 2
Query:  128 TYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM--FVVGVNENEY 424
            +++ KYDS+ G +    +  +D  T+    K + V   RNP E+PW E   + VVE+TGVF                V+I+AP K   +  FVVGVN++ Y
Sbjct:  122 SHLLKYDSILGTFDSDVVAGEDSITV--DGKTIKVVSNRNPLELPWKEMEIDIVVEATGVFVDAVGAGKHIQAGAKKVLITAPGKGEGVGTFVVGVNDHLY 220          

HSP 2 Score: 33.4982 bits (75), Expect = 8.907e-12
Identity = 17/35 (48.57%), Postives = 23/35 (65.71%), Query Frame = 1
Query:    4 KVKIGINGFGRIGRLVARVILQRDD--VELVAVND 102
            KV++ INGFGRIGR   R    R D  +++V +ND
Sbjct:   80 KVRVAINGFGRIGRNFIRCWAGRTDSNMDVVCIND 114          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPA (D-erythrose-4-phosphate dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=epd PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 8.963e-12
Identity = 33/112 (29.46%), Postives = 61/112 (54.46%), Query Frame = 2
Query:  107 LSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK---DAPMFVVGVNENEYKPE 433
            L++P+ M ++ +YD+ HG++ H ++K+ D++ ++ G+  + +    +P ++PW E   + V E+TGV                 V+IS PS    DA + V GVN++  K E
Sbjct:   37 LAKPEAMLHLTQYDTTHGRF-HTQVKL-DNQHMIIGDDAIKLLHEPDPAKLPWKEMDIDIVFEATGVINDRLECEAHIQAGAKQVLISHPSSSDVDATI-VFGVNQDLLKAE 145          

HSP 2 Score: 36.1946 bits (82), Expect = 8.963e-12
Identity = 14/35 (40.00%), Postives = 26/35 (74.29%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQ---RDDVELVAVND 102
            +++ ING+GRIGR + R + +   RD +++VA+N+
Sbjct:    2 IRVAINGYGRIGRSILRALYESAKRDRIQIVAINE 36          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_HALVA (Glyceraldehyde-3-phosphate dehydrogenase OS=Haloarcula vallismortis GN=gap PE=3 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 8.968e-12
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVND 102
            V++G+NGFGRIGR V R  L  DDVE+V +ND
Sbjct:    6 VRVGLNGFGRIGRNVFRASLHSDDVEIVGIND 37          

HSP 2 Score: 43.5134 bits (101), Expect = 8.968e-12
Identity = 32/106 (30.19%), Postives = 48/106 (45.28%), Query Frame = 2
Query:  131 YMFKYDSVHGQWKHHELKVKDDKTLLFG--EKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPM--FVVGVNENEYKPE 433
            Y  +YDSV G+ +   +   DD  L     +    +F   +P ++PW +   +   E+TG+F                V+ISAP K D P+   V GVN +EY  E
Sbjct:   46 YFAQYDSVMGELEGASV---DDGVLTVDGTDFEAGIFHETDPTQLPWDDLDVDVAFEATGIFRTKEDASQHLDAGADKVLISAPPKGDEPVKQLVYGVNHDEYDGE 148          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_ENTAE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Enterobacter aerogenes GN=gap PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.518e-11
Identity = 38/107 (35.51%), Postives = 55/107 (51.40%), Query Frame = 2
Query:  107 LSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNENEY 424
            L   +YM YM KYDS HG++    ++VKD   ++ G K + V   ++P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N   Y
Sbjct:   20 LLDAEYMAYMLKYDSTHGRFDG-TVEVKDGHLVVNG-KTIRVTAEKDPANLKWNEIGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVRGANFETY 124          

HSP 2 Score: 22.7126 bits (47), Expect = 1.518e-11
Identity = 8/19 (42.11%), Postives = 13/19 (68.42%), Query Frame = 1
Query:   46 LVARVILQRDDVELVAVND 102
            +V R   +R D+E+V +ND
Sbjct:    1 IVFRAAQKRSDIEIVGIND 19          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: E4PD_AERHH (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=epd PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 4.292e-11
Identity = 31/105 (29.52%), Postives = 58/105 (55.24%), Query Frame = 2
Query:  107 LSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK---DAPMFVVGVN 412
            L+ P+ M ++ ++D+ HG++ HH +++  + ++L GE  +++F  R+P  +PW   G + V++ TGVF                V+ S P++   DA + V GVN
Sbjct:   37 LAAPEAMVHLTRFDTSHGRF-HHPVQLAGN-SMLVGEDLISLFAERDPSRLPWRALGVDVVLDCTGVFGSRADAELHLAAGAGKVLFSHPAEADVDATI-VYGVN 138          

HSP 2 Score: 34.2686 bits (77), Expect = 4.292e-11
Identity = 17/35 (48.57%), Postives = 27/35 (77.14%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQ--RD-DVELVAVND 102
            +KI ING+GRIGR V R + +  RD ++++VA+N+
Sbjct:    2 IKIAINGYGRIGRNVLRALYESGRDKNIKIVAINE 36          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P2_STAES (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 9.383e-11
Identity = 30/105 (28.57%), Postives = 51/105 (48.57%), Query Frame = 2
Query:  116 PDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNENE 421
            P+ + ++  YD+ HG +   + KV+  +  +      + +   RNPE +PW E   + V+E+TG F                V+++ PSK  D  M V GVN+N+
Sbjct:   38 PETIAHLLNYDTTHGVY---DKKVEPIESGIKVNGHEIKLLSDRNPENLPWNEMDIDVVIEATGKFNHGDKAVAHINAGAKKVLLTGPSKGGDVQMIVKGVNDNQ 139          

HSP 2 Score: 33.4982 bits (75), Expect = 9.383e-11
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 1
Query:   13 IGINGFGRIGRLVARVILQRDDVELVAVN 99
            I ING GRIGR+V R+ L   ++ + A+N
Sbjct:    5 IAINGMGRIGRMVLRIALNNKNLNVKAIN 33          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P2_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 9.383e-11
Identity = 30/105 (28.57%), Postives = 51/105 (48.57%), Query Frame = 2
Query:  116 PDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNENE 421
            P+ + ++  YD+ HG +   + KV+  +  +      + +   RNPE +PW E   + V+E+TG F                V+++ PSK  D  M V GVN+N+
Sbjct:   38 PETIAHLLNYDTTHGVY---DKKVEPIESGIKVNGHEIKLLSDRNPENLPWNEMDIDVVIEATGKFNHGDKAVAHINAGAKKVLLTGPSKGGDVQMIVKGVNDNQ 139          

HSP 2 Score: 33.4982 bits (75), Expect = 9.383e-11
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 1
Query:   13 IGINGFGRIGRLVARVILQRDDVELVAVN 99
            I ING GRIGR+V R+ L   ++ + A+N
Sbjct:    5 IAINGMGRIGRMVLRIALNNKNLNVKAIN 33          
The following BLAST results are available for this feature:
BLAST of CK739655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
G3PA_SCEVA7.436e-1233.33Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_GRAVE8.907e-1234.65Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
E4PD_SHEPA8.963e-1229.46D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_HALVA8.968e-1262.50Glyceraldehyde-3-phosphate dehydrogenase OS=Haloar... [more]
G3P_ENTAE1.518e-1135.51Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
E4PD_AERHH4.292e-1129.52D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
G3P2_STAES9.383e-1128.57Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAEQ9.383e-1128.57Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6042 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739655 ID=CK739655; Name=CK739655; organism=Citrus sinensis; type=EST; length=436bp
GGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTGGTAGGCTGGT
GGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTTGCTGTTAATG
ATCCCTTTATCACAACCCGATTACATGACATACATGTTTAAGTACGACAG
TGTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGGACGATAAGA
CCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCA
GAGGAGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTCGAC
TGGAGTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTG
CTAAGAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGTT
GTCGGTGTCAATGAAAACGAGTACAAACCAGAGCTC
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