CK739655

Overview
NameCK739655
Unique NameCK739655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.767e-33
Identity = 56/111 (50.45%), Postives = 71/111 (63.96%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +Y  YMFKYDS HG++K  +++ KD   ++ G K + VFG R+P  IPW + GA+YVVESTGVFT               VIISAPS DAPMFVVGVN + YKP++
Sbjct:   35 PFIDTEYAAYMFKYDSTHGRFKG-KVEAKDGGLIIDG-KHIQVFGERDPSNIPWGKAGADYVVESTGVFTGKEAASAHLKGGAKKVIISAPSGDAPMFVVGVNLDAYKPDM 143          

HSP 2 Score: 55.4546 bits (132), Expect = 1.767e-33
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT 117
            +K+GINGFGRIGR+V R  L+  +VE+VAVNDPFI T
Sbjct:    3 IKVGINGFGRIGRIVLRNALKNPEVEVVAVNDPFIDT 39          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.997e-33
Identity = 57/111 (51.35%), Postives = 67/111 (60.36%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P  +P+Y  YM KYDS HGQ+      V+D   L+   + V  +  RNPEEIPWAETGAEY+VESTGVFT               VIISAPS DAPMFV+GVN   Y  +L
Sbjct:   36 PFIEPEYAAYMLKYDSTHGQFNGDIQTVEDG--LVVNSRNVKFYNKRNPEEIPWAETGAEYIVESTGVFTTTEKAKAHLKGGAKKVIISAPSADAPMFVMGVNHKSYTTDL 144          

HSP 2 Score: 51.9878 bits (123), Expect = 2.997e-33
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            +K+GINGFGRIGR+V R   Q  +VE+VAVNDPFI
Sbjct:    4 IKVGINGFGRIGRIVFRNAAQSCEVEVVAVNDPFI 38          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.207e-32
Identity = 49/111 (44.14%), Postives = 63/111 (56.76%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P  +  Y  YM KYDS HGQ+K  +++      L    K +  +  R+P  IPW + G +YVVESTGVFT               VIISAPS DAPMFV+GVNE  Y+P++
Sbjct:   35 PFIETKYAAYMLKYDSTHGQFKG-DIQHSSSNNLTVNNKTIHFYQERDPANIPWGKHGVDYVVESTGVFTTTEKAKAHLSGGAKKVIISAPSADAPMFVMGVNEKSYRPDI 144          

HSP 2 Score: 60.077 bits (144), Expect = 4.207e-32
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTR 120
            VK+GINGFGRIGR+V R  ++ DDVE+VAVNDPFI T+
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHDDVEIVAVNDPFIETK 40          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 4.207e-32
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YM YMF+YDS HG++ H  +K ++ K ++ G  P+T+F  R+P +I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   36 PFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 144          

HSP 2 Score: 56.225 bits (134), Expect = 4.207e-32
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    1 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            GKVK+GINGFGRIGRLV R       V++VA+NDPFI
Sbjct:    2 GKVKVGINGFGRIGRLVTRAAFNSGKVDIVAINDPFI 38          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.478e-32
Identity = 54/107 (50.47%), Postives = 69/107 (64.49%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEY 424
            P    DYM YMFKYD+VHG++K   ++VKD K ++ G   +TVF  +NP +I W   GA+Y+VESTGVFT               V+ISAPS DAPMFVVGVN ++Y
Sbjct:   35 PFIALDYMVYMFKYDTVHGRYKG-TVEVKDGKLVVDGHA-ITVFAEKNPADIKWGSAGADYIVESTGVFTTVEKASLHLQGGAKKVVISAPSADAPMFVVGVNLDKY 139          

HSP 2 Score: 53.9138 bits (128), Expect = 5.478e-32
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            VK+GINGFGRIGR+V R  LQ  ++E+VA+NDPFI
Sbjct:    3 VKVGINGFGRIGRIVLRNALQLGNIEVVAINDPFI 37          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.478e-32
Identity = 53/110 (48.18%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPE 433
            P    +YM YMFKYDSVHG++K   ++VK+   ++ G +P+ VF  R+P  IPW   GA+YVVESTGVFT               V+ISAPS DAPM+V GVN ++Y P+
Sbjct:   34 PFIDLEYMAYMFKYDSVHGRFKG-TVEVKNGSFVVDG-RPMKVFAERDPAAIPWGSVGADYVVESTGVFTTIDKASAHLKGGAKKVVISAPSADAPMYVCGVNLDKYNPK 141          

HSP 2 Score: 56.225 bits (134), Expect = 5.478e-32
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            VK+GINGFGRIGR+V R  LQ  D+E+VAVNDPFI
Sbjct:    2 VKVGINGFGRIGRIVLRNALQFQDIEVVAVNDPFI 36          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 5.479e-32
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P    +YM YMF+YDS HG++ H  +K ++ K ++ G  P+T+F  R+P +I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   36 PFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 144          

HSP 2 Score: 55.8398 bits (133), Expect = 5.479e-32
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    1 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            GKVK+G+NGFGRIGRLV R       V++VA+NDPFI
Sbjct:    2 GKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFI 38          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.134e-32
Identity = 54/111 (48.65%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P  +P Y  YM KYDS HGQ+K  ++KV D   L    K +     ++P  IPW+ETGA YVVESTGVFT               V+ISAPS DAPMFV+GVN   YKP++
Sbjct:   35 PFIEPHYAAYMLKYDSTHGQFKG-DIKV-DGNNLTVNGKTIRFHMEKDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSPDAPMFVMGVNHETYKPDI 143          

HSP 2 Score: 55.0694 bits (131), Expect = 7.134e-32
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            VK+GINGFGRIGR+V R  ++ +DV++VAVNDPFI
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVDIVAVNDPFI 37          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.292e-32
Identity = 53/111 (47.75%), Postives = 67/111 (60.36%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 436
            P   P+Y  YMFKYDS H  +K  E+    +K  + G K +TVF  R+P  IPW + G +YV+ESTGVFT               V+I+APSKDAPMFVVGVNE +Y  +L
Sbjct:   35 PFIAPEYAAYMFKYDSTHKAYKG-EVSASGNKINIDG-KEITVFQERDPVNIPWGKAGVDYVIESTGVFTTLEGAQKHIDAGAKKVVITAPSKDAPMFVVGVNEEKYTSDL 143          

HSP 2 Score: 55.4546 bits (132), Expect = 9.292e-32
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            + +GINGFGRIGRLV RV L R D+++VA+NDPFI
Sbjct:    3 ITVGINGFGRIGRLVLRVALSRADIKVVAINDPFI 37          
BLAST of CK739655 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.576e-31
Identity = 54/110 (49.09%), Postives = 69/110 (62.73%), Query Frame = 2
Query:  104 PLSQPDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPE 433
            P    +YM YMFKYDS HG +K   +++KD K ++ G KP+ V+G R+P  I W   GA+YVVESTGVFT               V+ISAPS DAPMFV GVN ++Y P+
Sbjct:   35 PFIDLEYMVYMFKYDSTHGVFKG-SVEIKDGKLVIEG-KPIVVYGERDPANIQWGAAGADYVVESTGVFTTQEKAELHLKGGAKKVVISAPSADAPMFVCGVNLDKYDPK 142          

HSP 2 Score: 51.6026 bits (122), Expect = 1.576e-31
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    7 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 111
            VK+GINGFGRIGR+V R  +   D+++VA+NDPFI
Sbjct:    3 VKVGINGFGRIGRIVLRNAIIHGDIDVVAINDPFI 37          
The following BLAST results are available for this feature:
BLAST of CK739655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
G3P_YARLI1.767e-3350.45Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_ERYGR2.997e-3351.35Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_PARBA4.207e-3244.14Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_PONAB4.207e-3247.75Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]
G3P_SCHCO5.478e-3250.47Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P2_AGABI5.478e-3248.18Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P_HUMAN5.479e-3247.75Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_COCHE7.134e-3248.65Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_PICPA9.292e-3247.75Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_PHARH1.576e-3149.09Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6042 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739655 ID=CK739655; Name=CK739655; organism=Citrus sinensis; type=EST; length=436bp
GGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTGGTAGGCTGGT
GGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTTGCTGTTAATG
ATCCCTTTATCACAACCCGATTACATGACATACATGTTTAAGTACGACAG
TGTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGGACGATAAGA
CCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCA
GAGGAGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTCGAC
TGGAGTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTG
CTAAGAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGTT
GTCGGTGTCAATGAAAACGAGTACAAACCAGAGCTC
back to top