CK739675

Overview
NameCK739675
Unique NameCK739675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.242e-15
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 3
Query:   36 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD 305
            G VI   +  AW+ QL K  E  + +VVDFTA+WCGPC+ IAP    L+      V+FLKVDVD + +VA    + AMPTF   K+G   D
Sbjct:    3 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKAD 93          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.995e-15
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 3
Query:  102 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            ++LVVVDF+A+WCGPC+ I PF   L  K  +V+F+++DVD+ + VAT   V+ MPTF F K GK V +
Sbjct:   20 EKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQE 88          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.521e-15
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 3
Query:   66 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTF-MFLKEGKIV 302
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF  F K+G+ V
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKV 87          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.521e-15
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 3
Query:   90 SNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 302
            SN   +L+VVDF+A+WCGPC+ I PF   + +K P+V+F+++DVD+ + VA+   V+ MPTF F K  + V
Sbjct:   16 SNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKV 86          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.113e-14
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 3
Query:   39 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            +V+   + E+WN  + ++      +V  FTA WC P  F+  F  ELA    + LFL VDVDE+K VA+   V+AMPTF+FLK+G  +DK
Sbjct:    3 RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDK 92          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.238e-14
Identity = 39/80 (48.75%), Postives = 59/80 (73.75%), Query Frame = 3
Query:   72 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            N QL K++   +LVV+DF A+WCGPC+ I+P LAEL+ +  + V+ LKVDVDE + +A ++ + +MPTF+FLK G  V++
Sbjct:   12 NGQLTKASG--KLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEE 89          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.238e-14
Identity = 36/76 (47.37%), Postives = 55/76 (72.37%), Query Frame = 3
Query:   84 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            Q +  + +LVV+DF A+WCGPC+ I+P L EL+ +   NV+ LKVDVDE + +A ++ + +MPTF+FLK G  V++
Sbjct:   22 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEE 97          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.523e-14
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:   72 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK--LPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 302
            N++LQK   +   VVVDF A WC PC+ IAP   +L+ K  +P+VL F KV+VD ++  A  + + AMPTFMF KEGK V
Sbjct:    8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQV 87          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.421e-14
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 3
Query:   72 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD 305
            NE L+KS ++ +L++VDF A+WCGPCR I+P    L+ +  N  FLKV+ D  + +   +++ AMPTF+F K  + VD
Sbjct:   13 NEILEKS-DSNRLIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVD 89          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_NEUCR (Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.230e-13
Identity = 38/71 (53.52%), Postives = 47/71 (66.20%), Query Frame = 3
Query:   99 TKQLVVVDFTASWCGPCRFIAPFLAELAK--KLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 302
            T Q VV DF A WCGPC+ IAP  A+ AK   +PN L F K++VD ++ VA  + V AMPTF+F K GK V
Sbjct:   20 TTQYVVADFYADWCGPCKAIAPMYAQFAKTFSIPNFLAFAKINVDSVQQVAQHYRVSAMPTFLFFKNGKQV 90          
The following BLAST results are available for this feature:
BLAST of CK739675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
TRXH_CHLRE2.242e-1546.15Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
THIO_CHICK4.995e-1550.72Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_PONAB8.521e-1548.75Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_OPHHA8.521e-1546.48Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
TRXL4_ARATH1.113e-1443.33Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIO2_DROYA3.238e-1448.75Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO2_DROME3.238e-1447.37Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
THIO_FUSCU5.523e-1450.00Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]
NGLY1_CAEBR9.421e-1443.59Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO_NEUCR1.230e-1353.52Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6062 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739675 ID=CK739675; Name=CK739675; organism=Citrus sinensis; type=EST; length=308bp
AACCGCGGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGG
TGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAAC
CAAACAGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCC
GTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTC
CTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTG
GGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTG
TGGACAAG
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