CK739675

Overview
NameCK739675
Unique NameCK739675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.751e-12
Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 3
Query:   99 TKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD 305
            +++LV+VDF A WCGPCR I+P + ELA++ +  V  +K++ DE  S++ ++ + ++PT M  K+GK VD
Sbjct:   19 SEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVD 88          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.504e-11
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 3
Query:  108 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            LV+VDF A WCGPC+ + P L  LA +LP V  LK+D+D     A  + V ++PT +  K+GK V++
Sbjct:   18 LVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVER 84          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.566e-11
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 3
Query:  111 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            VV+D    WCGPC+ +AP   ELA+KL +V+FLK+D + E K +A +  +  +PTF  LK GKIVD+
Sbjct:  106 VVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDE 172          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 3
Query:  108 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 302
            LV+VDF A WCGPCR + P L  LA +LP+V   K+++DE    A  + V ++PT +  K+G  V
Sbjct:   18 LVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEV 82          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11
Identity = 32/75 (42.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query:   84 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD 305
            Q+  E+   V+VDF A WCGPCR +AP + E+A++  + V  +KV+ DE  SVA+ + + ++PT M  K+G+ VD
Sbjct:   14 QEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVD 88          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.749e-11
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 3
Query:  111 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDK 147          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.749e-11
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 3
Query:  111 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDK 147          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.749e-11
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 3
Query:  111 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDK 147          
The following BLAST results are available for this feature:
BLAST of CK739675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
THIO_CYACA6.751e-1242.86Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO_CHLMU1.504e-1144.78Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
TRXF_MESCR2.566e-1149.25Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO_CHLPN7.465e-1144.62Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
THIO1_SYNE77.465e-1142.67Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIOM_RAT9.749e-1144.78Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE9.749e-1144.78Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN9.749e-1144.78Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6062 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739675 ID=CK739675; Name=CK739675; organism=Citrus sinensis; type=EST; length=308bp
AACCGCGGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGG
TGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAAC
CAAACAGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCC
GTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTC
CTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTG
GGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTG
TGGACAAG
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