CK739676

Overview
NameCK739676
Unique NameCK739676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDA1B_XENLA (Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-B PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.448e-46
Identity = 79/112 (70.54%), Postives = 101/112 (90.18%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDDESY  +FKP++ KVME+F+P AVVLQCGADSLSGDRLGCFNL+IKGHA+CV+F+++FN+P+L+LGGGGYTIRNVARCW Y+T VAL  E  +++P ++Y+EYFGPD+
Sbjct:  230 DGIDDESYEAIFKPVMTKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPMLMLGGGGYTIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDF 341          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC1_STRPU (Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.292e-46
Identity = 78/112 (69.64%), Postives = 100/112 (89.29%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDDESY  +FKPI+ KVME+++P A+ LQCGADSLSGDRLGCFNL++KGHA+CV+FM+ +N+PLLL+GGGGYTIRNVARCW Y+T  ALGVE  +++P ++Y+EYFGPD+
Sbjct:  229 DGIDDESYDKIFKPIMCKVMEMYQPSAICLQCGADSLSGDRLGCFNLTLKGHAKCVEFMKQYNLPLLLMGGGGYTIRNVARCWTYETSTALGVEIANELPYNDYFEYFGPDF 340          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC2_HUMAN (Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.214e-45
Identity = 79/112 (70.54%), Postives = 100/112 (89.29%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDDESY  +FKPII KVME+++P AVVLQCGADSLSGDRLGCFNL++KGHA+CV+ +++FN+PLL+LGGGGYTIRNVARCW Y+T VAL  E  +++P ++Y+EYFGPD+
Sbjct:  231 DGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDF 342          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC2_CHICK (Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.214e-45
Identity = 79/112 (70.54%), Postives = 100/112 (89.29%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDDESY  +FKPII KVME+++P AVVLQCGADSLSGDRLGCFNL++KGHA+CV+ +++FN+PLL+LGGGGYTIRNVARCW Y+T VAL  E  +++P ++Y+EYFGPD+
Sbjct:  231 DGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDF 342          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC2_MOUSE (Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.070e-45
Identity = 79/112 (70.54%), Postives = 99/112 (88.39%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDDESY  +FKPII KVME+++P AVVLQCGADSLSGDRLGCFNL++KGHA+CV+  ++FN+PLL+LGGGGYTIRNVARCW Y+T VAL  E  +++P ++Y+EYFGPD+
Sbjct:  231 DGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVAKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDF 342          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDA11_DICDI (Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.484e-43
Identity = 72/112 (64.29%), Postives = 98/112 (87.50%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDDESY  +F+PII  VM+ +RPGAVV+QCGADSL+GDRLGCFNL+++GHA+C++F++SFNVPL++LGGGGYTI+NVARCW Y+T + +  E  D++P ++Y EY+GP+Y
Sbjct:  225 DGIDDESYQSIFRPIIRSVMDFYRPGAVVIQCGADSLTGDRLGCFNLTLRGHAQCIEFLKSFNVPLVVLGGGGYTIKNVARCWTYETSILVDSELKDELPYNDYLEYYGPEY 336          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC1_DROME (Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 4.316e-43
Identity = 72/112 (64.29%), Postives = 97/112 (86.61%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DG+DD++Y  +F PII KVME F+P AVVLQCGADSL+GDRLGCFNL++KGH +CV+F++ +N+P L++GGGGYTIRNV+RCW Y+T VAL VE  +++P ++Y+EYFGPD+
Sbjct:  228 DGMDDDAYESIFVPIISKVMETFQPAAVVLQCGADSLTGDRLGCFNLTVKGHGKCVEFVKKYNLPFLMVGGGGYTIRNVSRCWTYETSVALAVEIANELPYNDYFEYFGPDF 339          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: CLR6_SCHPO (Histone deacetylase clr6 OS=Schizosaccharomyces pombe GN=clr6 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.813e-41
Identity = 70/112 (62.50%), Postives = 93/112 (83.04%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDDESY  +FKP+I  +M+ FRP AV+LQCG DSL+GDRLGCFNLS+KGH+ CV F++SFN+P++ +GGGGYT+RNVAR W Y+TG+  G E D+ +P ++Y +Y+GPDY
Sbjct:  227 DGIDDESYESVFKPVISHIMQWFRPEAVILQCGTDSLAGDRLGCFNLSMKGHSMCVDFVKSFNLPMICVGGGGYTVRNVARVWTYETGLLAGEELDENLPYNDYLQYYGPDY 338          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: RPD3_YEAST (Histone deacetylase RPD3 OS=Saccharomyces cerevisiae GN=RPD3 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.891e-41
Identity = 69/112 (61.61%), Postives = 93/112 (83.04%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDD +Y  +F+P+I K+ME ++P AVVLQCG DSLSGDRLGCFNLS++GHA CV +++SF +P++++GGGGYT+RNVAR WC++TG+   V  D  +P +EYYEY+GPDY
Sbjct:  240 DGIDDATYRSVFEPVIKKIMEWYQPSAVVLQCGGDSLSGDRLGCFNLSMEGHANCVNYVKSFGIPMMVVGGGGYTMRNVARTWCFETGLLNNVVLDKDLPYNEYYEYYGPDY 351          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC3_CHICK (Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.420e-40
Identity = 67/112 (59.82%), Postives = 93/112 (83.04%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDD+SY +LF+P+I +V++ ++P  +VLQCGADSL  DRLGCFNLSI+GH ECV++++SFN+PLL+LGGGGYT+RNVARCW Y+T + +     +++P  EY+EYF PD+
Sbjct:  225 DGIDDQSYKHLFQPVINQVVDYYQPTCIVLQCGADSLGRDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDEAISEELPYSEYFEYFAPDF 336          
The following BLAST results are available for this feature:
BLAST of CK739676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
HDA1B_XENLA5.448e-4670.54Probable histone deacetylase 1-B OS=Xenopus laevis... [more]
HDAC1_STRPU9.292e-4669.64Histone deacetylase 1 OS=Strongylocentrotus purpur... [more]
HDAC2_HUMAN1.214e-4570.54Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=... [more]
HDAC2_CHICK1.214e-4570.54Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE... [more]
HDAC2_MOUSE2.070e-4570.54Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=... [more]
HDA11_DICDI1.484e-4364.29Type-1 histone deacetylase 1 OS=Dictyostelium disc... [more]
HDAC1_DROME4.316e-4364.29Histone deacetylase Rpd3 OS=Drosophila melanogaste... [more]
CLR6_SCHPO1.813e-4162.50Histone deacetylase clr6 OS=Schizosaccharomyces po... [more]
RPD3_YEAST6.891e-4161.61Histone deacetylase RPD3 OS=Saccharomyces cerevisi... [more]
HDAC3_CHICK3.420e-4059.82Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6063 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739676 ID=CK739676; Name=CK739676; organism=Citrus sinensis; type=EST; length=341bp
TGATGATGGTATCGATGATGAGAGCTACCATTACTTGTTCAAACCGATAA
TCGGAAAAGTGATGGAAGTTTTTAGACCTGGTGCTGTGGTCCTCCAATGT
GGTGCTGACTCATTGTCTGGGGATAGGTTAGGATGCTTCAATCTTTCAAT
TAAAGGTCATGCAGAATGTGTCAAATTTATGAGATCATTCAATGTGCCTC
TGTTGCTGCTGGGTGGTGGTGGTTACACTATTCGGAATGTTGCTCGTTGC
TGGTGCTACCAGACAGGAGTTGCACTTGGAGTAGAGGGTGATGACAAGAT
GCCACAGCATGAGTATTATGAGTATTTTGGTCCTGACTATA
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