CK739676
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDA1B_XENLA (Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-B PE=1 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 5.448e-46 Identity = 79/112 (70.54%), Postives = 101/112 (90.18%), Query Frame = 2 Query: 5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340 DGIDDESY +FKP++ KVME+F+P AVVLQCGADSLSGDRLGCFNL+IKGHA+CV+F+++FN+P+L+LGGGGYTIRNVARCW Y+T VAL E +++P ++Y+EYFGPD+ Sbjct: 230 DGIDDESYEAIFKPVMTKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPMLMLGGGGYTIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDF 341
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC1_STRPU (Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 9.292e-46 Identity = 78/112 (69.64%), Postives = 100/112 (89.29%), Query Frame = 2 Query: 5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340 DGIDDESY +FKPI+ KVME+++P A+ LQCGADSLSGDRLGCFNL++KGHA+CV+FM+ +N+PLLL+GGGGYTIRNVARCW Y+T ALGVE +++P ++Y+EYFGPD+ Sbjct: 229 DGIDDESYDKIFKPIMCKVMEMYQPSAICLQCGADSLSGDRLGCFNLTLKGHAKCVEFMKQYNLPLLLMGGGGYTIRNVARCWTYETSTALGVEIANELPYNDYFEYFGPDF 340
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC2_HUMAN (Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2) HSP 1 Score: 181.415 bits (459), Expect = 1.214e-45 Identity = 79/112 (70.54%), Postives = 100/112 (89.29%), Query Frame = 2 Query: 5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340 DGIDDESY +FKPII KVME+++P AVVLQCGADSLSGDRLGCFNL++KGHA+CV+ +++FN+PLL+LGGGGYTIRNVARCW Y+T VAL E +++P ++Y+EYFGPD+ Sbjct: 231 DGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDF 342
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC2_CHICK (Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 1.214e-45 Identity = 79/112 (70.54%), Postives = 100/112 (89.29%), Query Frame = 2 Query: 5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340 DGIDDESY +FKPII KVME+++P AVVLQCGADSLSGDRLGCFNL++KGHA+CV+ +++FN+PLL+LGGGGYTIRNVARCW Y+T VAL E +++P ++Y+EYFGPD+ Sbjct: 231 DGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDF 342
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC2_MOUSE (Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 2.070e-45 Identity = 79/112 (70.54%), Postives = 99/112 (88.39%), Query Frame = 2 Query: 5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340 DGIDDESY +FKPII KVME+++P AVVLQCGADSLSGDRLGCFNL++KGHA+CV+ ++FN+PLL+LGGGGYTIRNVARCW Y+T VAL E +++P ++Y+EYFGPD+ Sbjct: 231 DGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVAKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDF 342
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDA11_DICDI (Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 1.484e-43 Identity = 72/112 (64.29%), Postives = 98/112 (87.50%), Query Frame = 2 Query: 5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340 DGIDDESY +F+PII VM+ +RPGAVV+QCGADSL+GDRLGCFNL+++GHA+C++F++SFNVPL++LGGGGYTI+NVARCW Y+T + + E D++P ++Y EY+GP+Y Sbjct: 225 DGIDDESYQSIFRPIIRSVMDFYRPGAVVIQCGADSLTGDRLGCFNLTLRGHAQCIEFLKSFNVPLVVLGGGGYTIKNVARCWTYETSILVDSELKDELPYNDYLEYYGPEY 336
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC1_DROME (Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1 SV=2) HSP 1 Score: 172.94 bits (437), Expect = 4.316e-43 Identity = 72/112 (64.29%), Postives = 97/112 (86.61%), Query Frame = 2 Query: 5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340 DG+DD++Y +F PII KVME F+P AVVLQCGADSL+GDRLGCFNL++KGH +CV+F++ +N+P L++GGGGYTIRNV+RCW Y+T VAL VE +++P ++Y+EYFGPD+ Sbjct: 228 DGMDDDAYESIFVPIISKVMETFQPAAVVLQCGADSLTGDRLGCFNLTVKGHGKCVEFVKKYNLPFLMVGGGGYTIRNVSRCWTYETSVALAVEIANELPYNDYFEYFGPDF 339
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: CLR6_SCHPO (Histone deacetylase clr6 OS=Schizosaccharomyces pombe GN=clr6 PE=1 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 1.813e-41 Identity = 70/112 (62.50%), Postives = 93/112 (83.04%), Query Frame = 2 Query: 5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340 DGIDDESY +FKP+I +M+ FRP AV+LQCG DSL+GDRLGCFNLS+KGH+ CV F++SFN+P++ +GGGGYT+RNVAR W Y+TG+ G E D+ +P ++Y +Y+GPDY Sbjct: 227 DGIDDESYESVFKPVISHIMQWFRPEAVILQCGTDSLAGDRLGCFNLSMKGHSMCVDFVKSFNLPMICVGGGGYTVRNVARVWTYETGLLAGEELDENLPYNDYLQYYGPDY 338
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: RPD3_YEAST (Histone deacetylase RPD3 OS=Saccharomyces cerevisiae GN=RPD3 PE=1 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 6.891e-41 Identity = 69/112 (61.61%), Postives = 93/112 (83.04%), Query Frame = 2 Query: 5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340 DGIDD +Y +F+P+I K+ME ++P AVVLQCG DSLSGDRLGCFNLS++GHA CV +++SF +P++++GGGGYT+RNVAR WC++TG+ V D +P +EYYEY+GPDY Sbjct: 240 DGIDDATYRSVFEPVIKKIMEWYQPSAVVLQCGGDSLSGDRLGCFNLSMEGHANCVNYVKSFGIPMMVVGGGGYTMRNVARTWCFETGLLNNVVLDKDLPYNEYYEYYGPDY 351
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC3_CHICK (Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 3.420e-40 Identity = 67/112 (59.82%), Postives = 93/112 (83.04%), Query Frame = 2 Query: 5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340 DGIDD+SY +LF+P+I +V++ ++P +VLQCGADSL DRLGCFNLSI+GH ECV++++SFN+PLL+LGGGGYT+RNVARCW Y+T + + +++P EY+EYF PD+ Sbjct: 225 DGIDDQSYKHLFQPVINQVVDYYQPTCIVLQCGADSLGRDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDEAISEELPYSEYFEYFAPDF 336 The following BLAST results are available for this feature:
BLAST of CK739676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 43
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK739676 ID=CK739676; Name=CK739676; organism=Citrus sinensis; type=EST; length=341bpback to top |