CK739679

Overview
NameCK739679
Unique NameCK739679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739679 vs. ExPASy Swiss-Prot
Match: FRIML_PAGBE (Ferritin, liver middle subunit OS=Pagothenia bernacchii PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 4.386e-12
Identity = 31/93 (33.33%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  145 MEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKGANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRV 423
            + +QN RGG++ LQ I  P    +  E G  L A++                HK A+ + D  + DF+E+ YL+EQVE+IKK+ +++  L R+
Sbjct:   67 LTFQNSRGGRIFLQDIKKP----ERDEWGSGLDALQSSLQLEKNVNQALLDLHKIASDHTDPHMCDFLETHYLNEQVESIKKLGDFITNLSRM 155          

HSP 2 Score: 31.5722 bits (70), Expect = 4.386e-12
Identity = 15/27 (55.56%), Postives = 18/27 (66.67%), Query Frame = 3
Query:    6 INVEYNVSYVYHAMFAYFDRDNVALKG 86
            IN+E   SY Y +M  YF RD+VAL G
Sbjct:   21 INMELFASYSYTSMAFYFSRDDVALPG 47          
BLAST of CK739679 vs. ExPASy Swiss-Prot
Match: FTMT_BOVIN (Ferritin, mitochondrial OS=Bos taurus GN=FTMT PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 9.509e-12
Identity = 40/128 (31.25%), Postives = 61/128 (47.66%), Query Frame = 1
Query:  100 SRNQVKRKESMLRNSMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKGANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVG---QGHGVWHFDQMLLHGE 474
            SR + +  E ++R     QN+RGG + LQ I  P    D  +    L AME                H  A+   D  L DF+E+ YL+EQV++IK++ ++V  L ++G    G   + FD+  L  E
Sbjct:  119 SREEAEHAEKLMR----LQNQRGGLICLQDIKKP----DQNDWKSGLNAMECALLLEKNVNQSLLELHTLASDKGDPHLCDFLETHYLNEQVKSIKELGDHVNNLVKMGAPESGLAEYLFDKHTLGNE 238          

HSP 2 Score: 33.8834 bits (76), Expect = 9.509e-12
Identity = 16/26 (61.54%), Postives = 19/26 (73.08%), Query Frame = 3
Query:    3 QINVEYNVSYVYHAMFAYFDRDNVAL 80
            QIN+E   SYVY +M  YF RD+VAL
Sbjct:   83 QINLELYASYVYLSMAYYFSRDDVAL 108          
BLAST of CK739679 vs. ExPASy Swiss-Prot
Match: FRIH_ECHGR (Ferritin heavy chain OS=Echinococcus granulosus PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.152e-11
Identity = 49/146 (33.56%), Postives = 67/146 (45.89%), Query Frame = 1
Query:   52 LTLTETMSRSRVS-PSFSRNQVKRKESMLRNS---MEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKGANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHGEE 477
            L +++   R  V+ P F     K  E    ++   M YQ  RGG++  Q I  P +     E    L AME                   ANKNND Q  +F+E ++L EQV  IKK++ YV  L+R G G G + FD+  L G E
Sbjct:   31 LAMSQHFDRDDVALPGFREFFAKASEEEREHAIKLMRYQCGRGGRIVYQDIAKPQT----TEWASGLEAMEMALKIEREVNESLLALRGVANKNNDSQFCEFLEGEFLGEQVSDIKKLAGYVTNLKRCGPGLGEYIFDKETLQGGE 172          
BLAST of CK739679 vs. ExPASy Swiss-Prot
Match: FRIMS_PAGBE (Ferritin, spleen middle subunit OS=Pagothenia bernacchii PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 3.544e-11
Identity = 30/93 (32.26%), Postives = 49/93 (52.69%), Query Frame = 1
Query:  145 MEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKGANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRV 423
            + +QN RGG++ LQ I  P    +  E G+ +  M+                HK A+   D  + DF+E+ YL+EQVE+IKK+ +++  L R+
Sbjct:   67 LTFQNSRGGRIFLQDIKKP----ERDEWGNGVDVMQCALQLEKNVNQALLDLHKIASGKVDPHMCDFLETHYLNEQVESIKKLGDFITNLSRM 155          

HSP 2 Score: 31.5722 bits (70), Expect = 3.544e-11
Identity = 15/27 (55.56%), Postives = 18/27 (66.67%), Query Frame = 3
Query:    6 INVEYNVSYVYHAMFAYFDRDNVALKG 86
            IN+E   SY Y +M  YF RD+VAL G
Sbjct:   21 INMELFASYSYTSMAFYFSRDDVALPG 47          
The following BLAST results are available for this feature:
BLAST of CK739679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
FRIML_PAGBE4.386e-1233.33Ferritin, liver middle subunit OS=Pagothenia berna... [more]
FTMT_BOVIN9.509e-1231.25Ferritin, mitochondrial OS=Bos taurus GN=FTMT PE=2... [more]
FRIH_ECHGR2.152e-1133.56Ferritin heavy chain OS=Echinococcus granulosus PE... [more]
FRIMS_PAGBE3.544e-1132.26Ferritin, spleen middle subunit OS=Pagothenia bern... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6066 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739679 ID=CK739679; Name=CK739679; organism=Citrus sinensis; type=EST; length=530bp
AGCAGATCAATGTGGAATACAATGTCTCCTATGTGTATCATGCCATGTTT
GCTTACTTTGACAGAGACAATGTCGCGCTCAAGGGTCTCGCCAAGTTTTT
CAAGGAATCAAGTGAAGAGGAAAGAGAGCATGCTGAGAAATTCGATGGAA
TATCAGAACAAACGAGGAGGTAAAGTGAAGCTGCAATCAATATTGATGCC
TCTCTCTGAGTTTGATCATGCTGAGAAAGGAGATGCTTTGTATGCCATGG
AGCTTACGCTGTCTCTGGAGAAGCTAACAAATGAGAAACTCCTCAACTTG
CACAAGGGGGCCAACAAGAACAATGATGTGCAGTTGGCAGATTTCGTTGA
AAGCAAGTATTTACACGAGCAGGTAGAAGCCATCAAAAAGATATCTGAAT
ATGTTGCTCAGCTGAGAAGAGTTGGCCAGGGGCATGGTGTCTGGCACTTT
GATCAAATGCTGCTCCATGGGGAGGAAGTTGTCGCATGATGGTGGACACA
TCTTGCTTGTCACCTGACTATCCCTACTAA
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