CK739695

Overview
NameCK739695
Unique NameCK739695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.344e-17
Identity = 54/117 (46.15%), Postives = 68/117 (58.12%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HL+DP +NN
Sbjct:  144 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLSDPVNNN 256          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.344e-17
Identity = 55/126 (43.65%), Postives = 70/126 (55.56%), Query Frame = 3
Query:   18 WVHAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            W  A       GG   YLGNP  V   ++  I   + + +  VE  R       + E   YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GP+ENL+ HLADP  NN
Sbjct:  130 WFKAGSQIFAEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLSDHLADPAVNN 253          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.344e-17
Identity = 54/117 (46.15%), Postives = 70/117 (59.83%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  V   ++ +I   + + +  VE  R          DP    YPGG+FDPLG ++DP++  E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  140 GGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 252          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.344e-17
Identity = 55/117 (47.01%), Postives = 66/117 (56.41%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  +   ++  I   + + + FVE  R          DP    YPGGAFDPLG + DP  F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL  HLADP  NN
Sbjct:  141 GGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLFDHLADPVANN 253          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.673e-17
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  183 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            YPGG+FDPLG + DP+ F E +VKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  190 YPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.673e-17
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  183 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA H+ADP +NN
Sbjct:  186 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 250          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  183 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            YPGG FDPLG + DP+ F + KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  189 YPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 53/117 (45.30%), Postives = 67/117 (57.26%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  V   ++  I   + + +  +E  R          DP    YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPL+NL  HLADP +NN
Sbjct:  143 GGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLDNLVDHLADPVNNN 255          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 59/133 (44.36%), Postives = 72/133 (54.14%), Query Frame = 3
Query:    6 GLGNWVHAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   W  A       GG   YLGNP  V   +L  I   + + +  VE  R          DP    YPGG+FDPLG ++ PQ F E KVKEIKNGRLA+ +  GF V Q+   G GPLE+LA H+ADP +NN
Sbjct:  127 GEAGWFKAGSQIFSDGG-LDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEDLADHIADPVNNN 254          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.264e-16
Identity = 42/66 (63.64%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  183 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            YPGG FDPLG + DP  F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENLA HLADP +NN
Sbjct:  202 YPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 266          
The following BLAST results are available for this feature:
BLAST of CK739695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB28_PEA4.344e-1746.15Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_POLMU4.344e-1743.65Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_APIGR4.344e-1746.15Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_GOSHI4.344e-1747.01Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_PETSP5.673e-1763.64Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_MAIZE5.673e-1762.12Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB29_MAIZE9.677e-1762.12Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB27_TOBAC9.677e-1745.30Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB21_WHEAT9.677e-1744.36Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PINSY1.264e-1663.64Chlorophyll a-b binding protein type 2 member 1A, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6082 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739695 ID=CK739695; Name=CK739695; organism=Citrus sinensis; type=EST; length=524bp
CATTGGGATTGGGCAACTGGGTGCATGCGCAAGAGTGGGCAGCAGTTCCT
GGAGGACAAGCCACATACTTAGGCAACCCTGTTCCATGGGGCACTCTCCC
CACAATTTTGGTGATTGAATTCCTTTCCATTGCCTTCGTTGAGCACCAAC
GCAGCATGGAGAAAGACCCCGAGAAGAAGAAGTACCCCGGTGGTGCTTTC
GACCCCTTGGGCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGT
CAAGGAGATAAAAAATGGGCGTTTGGCATTGTTGGCATTTGTGGGTTTCT
GCGTGCAACAATCAGCATATCCGGGCACAGGACCATTGGAGAACTTGGCA
ACTCACTTGGCTGATCCATGGCACAACAACATTGGGGACGTTATTATCCC
CAGAGGGATTGTGCCTTGAAGAACTGCATTGTTAAATTATCCAGTCCACT
GTAAAATTCCCTGTTAAAAGAGCCTTTAATGAAACAGAATTCGTATCTTT
CTGACTGTAAAAAAAAAAAAAAAA
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