CK739706

Overview
NameCK739706
Unique NameCK739706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 2
Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            K + + PEG+QE+ECPDD YILDAAE+AGIDLPYSCRAGSCS+CAGK            FL+DDQI  G+VLTCVAYPT DVT+ETHK+EE++
Sbjct:   55 KVTLVTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEELT 147          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 3.023e-31
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            PEGE E+E PDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+DDQ++AG+VLTC AYP SD+ +ETHK+EE++
Sbjct:   56 PEGEVELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEELT 142          

HSP 2 Score: 33.113 bits (74), Expect = 3.023e-31
Identity = 15/24 (62.50%), Postives = 17/24 (70.83%), Query Frame = 1
Query:   46 ANNNRGGRVIAMATYKVKLITPRG 117
            A   RG R+ A ATYKVKL+TP G
Sbjct:   35 AKQVRGARLRAQATYKVKLVTPEG 58          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.161e-30
Identity = 58/93 (62.37%), Postives = 73/93 (78.49%), Query Frame = 2
Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            K + + P G Q I+CPDDTY+LDAAE+AG+DLPYSCRAGSCS+CAGK            FL+DDQI+AG+VLTCVAYP  DVT+ETHK+E+++
Sbjct:    4 KVTLVTPSGTQTIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDIA 96          

HSP 2 Score: 23.0978 bits (48), Expect = 1.161e-30
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            ATYKV L+TP G
Sbjct:    1 ATYKVTLVTPSG 12          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.349e-30
Identity = 54/87 (62.07%), Postives = 69/87 (79.31%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            P+G+QE +CPDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+D+Q++ G+VLTCVA+PTSDV +ETHK+EE++
Sbjct:   10 PQGQQEFDCPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEELT 96          

HSP 2 Score: 26.5646 bits (57), Expect = 4.349e-30
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 1
Query:   82 ATYKVKLITPRGR 120
            ATYKVKL+TP+G+
Sbjct:    1 ATYKVKLVTPQGQ 13          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 2
Query:  128 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            I+CPDDTYILDAAE+AG+DLPYSCRAG+CSTCAGK            FL+DDQ++AGYVLTCVAYPTSDVT+ETHK+E++
Sbjct:   18 IDCPDDTYILDAAEEAGLDLPYSCRAGACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDL 97          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.251e-29
Identity = 56/92 (60.87%), Postives = 71/92 (77.17%), Query Frame = 2
Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            K + + P G Q I+CPDDTY+LDAAE+AG+DLPYSCRAGSCS+C GK            FL+DDQI+AG+VLTCVA+P  DVT+ETHK+E++
Sbjct:    4 KVTLVTPSGTQTIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95          

HSP 2 Score: 23.0978 bits (48), Expect = 1.251e-29
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            ATYKV L+TP G
Sbjct:    1 ATYKVTLVTPSG 12          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.121e-29
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            P G+QE +CPDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+D+QI  G+VLTCVAYP SD T+ETHK+EE++
Sbjct:   10 PSGQQEFQCPDDVYILDQAEEVGIDLPYSCRAGSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEEELT 96          

HSP 2 Score: 25.7942 bits (55), Expect = 2.121e-29
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 1
Query:   82 ATYKVKLITPRGR 120
            ATYKVKL+TP G+
Sbjct:    1 ATYKVKLVTPSGQ 13          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.762e-29
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = 2
Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            K   + P+G QE ECPDD YIL+ AE+ GID+PYSCRAGSCS+CAGK            FL+D+QI+ G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    4 KVKLITPDGPQEFECPDDVYILEHAEELGIDIPYSCRAGSCSSCAGKLVAGSVDQSDQSFLDDEQIEEGWVLTCVAYPKSDVTIETHKEEELT 96          

HSP 2 Score: 23.8682 bits (50), Expect = 2.762e-29
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            A+YKVKLITP G
Sbjct:    1 ASYKVKLITPDG 12          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.117e-29
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            P G+Q IECPDDTYILDAAE+AG+DLPYSCRAG+CS+CAGK            FL+D Q+D G+VLTCVAYPTSD T+ THK+E++
Sbjct:   10 PSGDQTIECPDDTYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDL 95          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.317e-29
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 2
Query:   35 LALKPTTTEVDV**PWLHTKSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            L LK +    D+       K   + P+G QE ECP D YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+D+QI+AG+VLTCVAYPTSDV +ETHK+E+++
Sbjct:   37 LGLKTSLKRGDLAVAMASYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDLT 148          
The following BLAST results are available for this feature:
BLAST of CK739706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_MESCR1.495e-3166.67Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER_WHEAT3.023e-3163.22Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]
FER1_PHYES1.161e-3062.37Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]
FERA_ALOMA4.349e-3062.07Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER1_APHFL8.203e-3071.25Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]
FER1_PHYAM1.251e-2960.87Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]
FER_COLES2.121e-2963.22Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]
FER_SAMNI2.762e-2960.22Ferredoxin OS=Sambucus nigra PE=1 SV=1[more]
FER_SCEQU3.117e-2965.12Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]
FER1_PEA5.317e-2954.46Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739706 ID=CK739706; Name=CK739706; organism=Citrus sinensis; type=EST; length=612bp
CTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCTTAAAGCCAA
CAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACAAAGTCAAGC
TCATTACACCCCGAGGGAGAGCAAGAAATTGAGTGTCCTGATGACACATA
TATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGCA
GGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTGGTAGTGTT
GACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGATGCAGGTTA
TGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGTTGAGACAC
ACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATATAACATGGA
GAATTTTGATATTATTATTATTAATATTGTGTATGGGGTTGGTAATTTAG
TGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGAATGAGTA
ATATGAAAAGGGGGATTTTGCTCTGTACTTCCATTTGCTGTCACAAATGA
AGTTGTTGTAGCTTTACCATAATAAAGATAGAATCATCTCTTCTATAAAA
AAAAAAAAAAAA
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