CK739725
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 3.769e-26 Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 2 Query: 62 DGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223 +GGR+TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL Sbjct: 3 EGGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 56
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.534e-19 Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 2 Query: 5 AGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223 AGQ+ ++ NE RKV R+TMRRTV + S IWYG DRPK+LGPFS +TPSYL GEF GDYGWDTAGL Sbjct: 13 AGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGL 87
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.828e-19 Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 2 Query: 56 VADGGRITMRRTV-KSAPQSI-WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223 ++ GRITMR+ V KSAP S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGL Sbjct: 27 ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGL 84
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.696e-18 Identity = 45/63 (71.43%), Postives = 48/63 (76.19%), Query Frame = 2 Query: 47 KVGVADGGRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223 KVG GRITMR+TV +A S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGL Sbjct: 19 KVGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGL 81
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 4.934e-18 Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 2 Query: 68 GRITMRRTVKS-APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223 GR++MR+TVK+ S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGL Sbjct: 31 GRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGL 83
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.444e-18 Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 2 Query: 56 VADGGRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223 + GR++MR+TV A S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGL Sbjct: 27 ITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGL 84
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 8.416e-18 Identity = 46/75 (61.33%), Postives = 51/75 (68.00%), Query Frame = 2 Query: 2 FAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223 F+GQ L+ NE RKVG + R+ M AP SIWYG DRP YLGPFS PSYL+GEFPGDYGWDTAGL Sbjct: 12 FSGQQ-LKPVNELSRKVGAGEA-RVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGL 84
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.099e-17 Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 2 Query: 56 VADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223 + G++TMR+TV A S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGL Sbjct: 27 ITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGL 86
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.436e-17 Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 2 Query: 56 VADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223 + GR+TMR+T A S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGL Sbjct: 27 ITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGL 86
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.436e-17 Identity = 46/79 (58.23%), Postives = 53/79 (67.09%), Query Frame = 2 Query: 2 FAGQTA-LRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223 FAG+ + S+E R G++TMR+TV A S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGL Sbjct: 13 FAGKAVNVPSSSEITRN------GKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGL 85 The following BLAST results are available for this feature:
BLAST of CK739725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739725 ID=CK739725; Name=CK739725; organism=Citrus sinensis; type=EST; length=225bpback to top |