CK739725

Overview
NameCK739725
Unique NameCK739725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length225
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.769e-26
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 2
Query:   62 DGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            +GGR+TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL
Sbjct:    3 EGGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 56          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.534e-19
Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 2
Query:    5 AGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            AGQ+ ++  NE  RKV      R+TMRRTV  +  S  IWYG DRPK+LGPFS +TPSYL GEF GDYGWDTAGL
Sbjct:   13 AGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGL 87          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.828e-19
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 2
Query:   56 VADGGRITMRRTV-KSAPQSI-WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            ++  GRITMR+ V KSAP S  WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGL
Sbjct:   27 ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGL 84          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.696e-18
Identity = 45/63 (71.43%), Postives = 48/63 (76.19%), Query Frame = 2
Query:   47 KVGVADGGRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            KVG    GRITMR+TV     +A  S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGL
Sbjct:   19 KVGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGL 81          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.934e-18
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 2
Query:   68 GRITMRRTVKS-APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            GR++MR+TVK+    S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGL
Sbjct:   31 GRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGL 83          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.444e-18
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 2
Query:   56 VADGGRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            +   GR++MR+TV    A  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGL
Sbjct:   27 ITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGL 84          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.416e-18
Identity = 46/75 (61.33%), Postives = 51/75 (68.00%), Query Frame = 2
Query:    2 FAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            F+GQ  L+  NE  RKVG  +  R+ M      AP  SIWYG DRP YLGPFS   PSYL+GEFPGDYGWDTAGL
Sbjct:   12 FSGQQ-LKPVNELSRKVGAGEA-RVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGL 84          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.099e-17
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   56 VADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            +   G++TMR+TV  A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGL
Sbjct:   27 ITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGL 86          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.436e-17
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:   56 VADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            +   GR+TMR+T   A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGL
Sbjct:   27 ITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGL 86          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.436e-17
Identity = 46/79 (58.23%), Postives = 53/79 (67.09%), Query Frame = 2
Query:    2 FAGQTA-LRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            FAG+   +  S+E  R       G++TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGL
Sbjct:   13 FAGKAVNVPSSSEITRN------GKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGL 85          
The following BLAST results are available for this feature:
BLAST of CK739725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
CB25_SOLLC3.769e-2694.44Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB2_PHYPA1.534e-1962.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_SOLLC5.828e-1975.86Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB21_MAIZE1.696e-1871.43Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_APIGR4.934e-1875.47Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_TOBAC6.444e-1868.97Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB23_POLMU8.416e-1861.33Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB25_TOBAC1.099e-1766.67Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB2G_SOLLC1.436e-1766.67Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB21_PETSP1.436e-1758.23Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6114 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739725 ID=CK739725; Name=CK739725; organism=Citrus sinensis; type=EST; length=225bp
ATTTGCTGGCCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGG
TTGGAGTTGCTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCC
GCTCCCCAGAGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACC
ATTCTCTGAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACT
ATGGCTGGGATACCGCTGGTTTATC
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