CK739729

Overview
NameCK739729
Unique NameCK739729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.615e-41
Identity = 78/83 (93.98%), Postives = 82/83 (98.80%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            EV DPLYPGG+FDPLGLADDPEAFA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  183 EVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.110e-41
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            EV DPLYPGGSFDPLGLA+DPEAFAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  185 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.110e-41
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            EV DPLYPGGSFDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  182 EVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.786e-40
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            EV DPLYPGGSFDPLGLADDPEAF ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  183 EVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.046e-40
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            EVTDP+YPGGSFDPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  174 EVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.196e-40
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            E+ DPLYPGGSFDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  182 EIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.196e-40
Identity = 77/83 (92.77%), Postives = 80/83 (96.39%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            EV DPLYPGGSFDPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  146 EVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 6.786e-40
Identity = 77/83 (92.77%), Postives = 78/83 (93.98%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            EV DPLY GGSFDPLGL DDPE FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  182 EVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 8.863e-40
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            E  D LYPGGSFDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  184 EAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.158e-39
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            EV DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  183 EVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
The following BLAST results are available for this feature:
BLAST of CK739729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB29_MAIZE1.615e-4193.98Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB25_TOBAC2.110e-4195.18Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_HORVU2.110e-4196.39Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_MAIZE1.786e-4092.77Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_SOYBN3.046e-4092.77Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_APIGR5.196e-4091.57Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA5.196e-4092.77Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB48_MAIZE6.786e-4092.77Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB21_SINAL8.863e-4093.98Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_POLMU1.158e-3990.36Chlorophyll a-b binding protein type 1 member F3, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6118 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739729 ID=CK739729; Name=CK739729; organism=Citrus sinensis; type=EST; length=487bp
GAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTT
GGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGA
ATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATT
GTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGACCC
TGTCAACAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGT
GAGCTTCGGTTGATAACATTAGTAGCGTGGAAATTGGAATTGAGAGTGAT
TGGTTATTGATGTGACTCTATTTCAACTTGCAAAACATGTGAATTATGTA
ATGTACTGCTACTACCAGTTTGAGGGGATTGTATTTTCATTCAATCTCTT
GTCGCACGGGTCTAGTTCTAGTTCCTCCTCCTTACAGGTTGTGCCAGAAT
CTAGTTACAAGTTTACATCAAAAAAAAAAAAAAAAAA
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