CK739729

Overview
NameCK739729
Unique NameCK739729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.158e-39
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            E  DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  182 EGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.579e-39
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 1
Query:    4 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            V DPLYPGGSFDPLGLA+DPEAFAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  186 VVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.579e-39
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            E  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  185 EAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.579e-39
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            E  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  185 EAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 4.399e-39
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            E  DP+YPGG+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  183 EGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.280e-38
Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            E  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  155 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.280e-38
Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            E+ DPLYPGGSFDPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  184 EIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.724e-38
Identity = 74/83 (89.16%), Postives = 78/83 (93.98%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            E  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  183 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.352e-38
Identity = 73/83 (87.95%), Postives = 78/83 (93.98%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            E  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  183 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
BLAST of CK739729 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 8.296e-38
Identity = 75/83 (90.36%), Postives = 77/83 (92.77%), Query Frame = 1
Query:    1 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 249
            E  DPLYPG +FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   68 EGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
The following BLAST results are available for this feature:
BLAST of CK739729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB21_LEMGI1.158e-3991.57Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PETSP2.579e-3991.46Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_ARATH2.579e-3991.57Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH2.579e-3991.57Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB21_GOSHI4.399e-3990.36Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB25_SOLLC1.280e-3889.16Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_WHEAT1.280e-3889.16Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_TOBAC3.724e-3889.16Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB24_SOLLC6.352e-3887.95Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB22_PINSY8.296e-3890.36Chlorophyll a-b binding protein type 2 member 2 (F... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6118 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739729 ID=CK739729; Name=CK739729; organism=Citrus sinensis; type=EST; length=487bp
GAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTT
GGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGA
ATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATT
GTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGACCC
TGTCAACAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGT
GAGCTTCGGTTGATAACATTAGTAGCGTGGAAATTGGAATTGAGAGTGAT
TGGTTATTGATGTGACTCTATTTCAACTTGCAAAACATGTGAATTATGTA
ATGTACTGCTACTACCAGTTTGAGGGGATTGTATTTTCATTCAATCTCTT
GTCGCACGGGTCTAGTTCTAGTTCCTCCTCCTTACAGGTTGTGCCAGAAT
CTAGTTACAAGTTTACATCAAAAAAAAAAAAAAAAAA
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