CK739810

Overview
NameCK739810
Unique NameCK739810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.811e-11
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 2
Query:   41 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            ++  ++ LMG  E  R       G +G     G +  Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DH+ADPV NN
Sbjct:  159 IWATQVVLMGLIEGYR----VGGGPLGE----GLDPLYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANN 252          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.671e-11
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 2
Query:  218 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPV NN
Sbjct:   87 DPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 138          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.671e-11
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP              +  ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP ++L DH+ADPVNNN
Sbjct:  190 YPGGSFDPL----------GLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 2
Query:  158 GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            G G+  Y             D  +  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NLLDHL +PV NN
Sbjct:  182 GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 32/72 (44.44%), Postives = 42/72 (58.33%), Query Frame = 2
Query:  158 GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            G G+  Y             D  +  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHL DPV NN
Sbjct:  185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP              +  ++  + K+KE+KNGRLAM ++ G+FV  +VT  GP +NL DHLADPVNNN
Sbjct:  152 YPGGSFDPL----------GLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNN 216          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 2
Query:  218 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            D  +  + K+KE+KNGRLAM A LG+FVQ +VT  GP +NL DHLA+P  NN
Sbjct:  211 DPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENN 262          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADP  NN
Sbjct:  189 YPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNN 253          
The following BLAST results are available for this feature:
BLAST of CK739810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB21_LEMGI2.811e-1137.50Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY3.671e-1157.69Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_WHEAT3.671e-1145.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_SOLLC6.262e-1144.44Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU6.262e-1144.44Chlorophyll a-b binding protein of LHCII type III,... [more]
CB21_PEA6.262e-1146.67Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_DUNSA8.179e-1157.69Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_POLMU8.179e-1146.67Chlorophyll a-b binding protein type 1 member F3, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6200 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739810 ID=CK739810; Name=CK739810; organism=Citrus sinensis; type=EST; length=529bp
CCCAGCGGGAACATACAACTACTGGGCAGACCCTTACACACTTTTCGTCC
TGGAAATGGCACTCATGGGATTTGCCGAGCACCGGAGATTCCAAGACTGG
GCAAATCCAGGATCAATGGGCAGGCAATACTTCCTCGGATTCGAGAAATA
CTTGGGAGGTTCCGGCGATCCGGCTTACCCTGGAGGACCTCTATTCAACC
CTCTGGGTCTTGGGAAAGATGAGAAGTCAATGAAGGATTTCAAGCTCAAG
GAAGTGAAGAATGGAAGATTGGCAATGTTGGCAATCTTGGGTTACTTTGT
TCAAGGGCTTGTTACATGAGTTGGGCCTTACCAGAACCTATTGGATCACT
TGGCTGATCCTGTCAACAACAATGTTTTGACTAGCCTCAAGTTTCACTGA
GAGAGAAATTTCTTGGTCATTGCTTGGAATTATATATTCCAAGCCTTGTC
ATCCCCCACTCTGTTCTATTCTACTTTCCCATTGTAAAATTATCTATGTG
AAAAGTGAATGTAACTTGGGCGGAAATGA
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