CK739834

Overview
NameCK739834
Unique NameCK739834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.410e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   74 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 128

HSP 2 Score: 29.261 bits (64), Expect = 3.410e-31
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  129 VWFKAGSQIFSEGGLDYLG 147

HSP 3 Score: 24.2534 bits (51), Expect = 3.410e-31
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  139 SEGGLDYLGN 148
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.748e-31
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   83 PGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 137

HSP 2 Score: 30.4166 bits (67), Expect = 5.748e-31
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAGAQIFS G    LG
Sbjct:  138 VWFKAGAQIFSEGGLDYLG 156

HSP 3 Score: 24.2534 bits (51), Expect = 5.748e-31
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  148 SEGGLDYLGN 157
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.469e-31
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   74 PGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 128

HSP 2 Score: 29.261 bits (64), Expect = 7.469e-31
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  129 VWFKAGSQIFSEGGLDYLG 147

HSP 3 Score: 24.2534 bits (51), Expect = 7.469e-31
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  139 SEGGLDYLGN 148
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.700e-31
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEA
Sbjct:   75 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEA 129

HSP 2 Score: 29.261 bits (64), Expect = 9.700e-31
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  130 VWFKAGSQIFSEGGLDYLG 148

HSP 3 Score: 24.2534 bits (51), Expect = 9.700e-31
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  140 SEGGLDYLGN 149
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.759e-30
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGG 184
            PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA   + G
Sbjct:   75 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAG 135

HSP 2 Score: 26.9498 bits (58), Expect = 2.759e-30
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 3 
Query:  171 WFKAGAQIFSRGRA*LLG 224
            WFKAG+QIFS G    LG
Sbjct:  131 WFKAGSQIFSDGGLDYLG 148

HSP 3 Score: 23.0978 bits (48), Expect = 2.759e-30
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            ++GGLDYLGN
Sbjct:  140 SDGGLDYLGN 149
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.759e-30
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGG 184
            PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEA  ++ G
Sbjct:   76 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAG 136

HSP 2 Score: 26.9498 bits (58), Expect = 2.759e-30
Identity = 12/19 (63.16%), Postives = 13/19 (68.42%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VW KAG+QIFS G    LG
Sbjct:  131 VWLKAGSQIFSEGGLDYLG 149

HSP 3 Score: 24.2534 bits (51), Expect = 2.759e-30
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  141 SEGGLDYLGN 150
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.759e-30
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTA LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   76 PGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 130

HSP 2 Score: 29.261 bits (64), Expect = 2.759e-30
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  131 VWFKAGSQIFSEGGLDYLG 149

HSP 3 Score: 24.2534 bits (51), Expect = 2.759e-30
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  141 SEGGLDYLGN 150
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.759e-30
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            P DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNG+KFGEA
Sbjct:   76 PSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEA 130

HSP 2 Score: 30.4166 bits (67), Expect = 2.759e-30
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAGAQIFS G    LG
Sbjct:  131 VWFKAGAQIFSEGGLDYLG 149

HSP 3 Score: 24.2534 bits (51), Expect = 2.759e-30
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  141 SEGGLDYLGN 150
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.760e-30
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEA
Sbjct:   74 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEA 128

HSP 2 Score: 29.261 bits (64), Expect = 2.760e-30
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  129 VWFKAGSQIFSEGGLDYLG 147

HSP 3 Score: 24.2534 bits (51), Expect = 2.760e-30
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  139 SEGGLDYLGN 148
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.655e-30
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   74 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 128

HSP 2 Score: 29.261 bits (64), Expect = 4.655e-30
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  129 VWFKAGSQIFSEGGLDYLG 147

HSP 3 Score: 24.2534 bits (51), Expect = 4.655e-30
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  139 SEGGLDYLGN 148
The following BLAST results are available for this feature:
BLAST of CK739834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB22_MAIZE3.410e-31100.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_PINSY5.748e-3198.18Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB21_SINAL7.469e-3198.18Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB24_PETSP9.700e-3198.18Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB21_WHEAT2.759e-3091.80Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP2.759e-3090.16Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB25_PETSP2.759e-3098.18Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_PETSP2.759e-3094.55Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_GOSHI2.760e-3094.55Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB29_MAIZE4.655e-3098.18Chlorophyll a-b binding protein M9, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6224 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739834 ID=CK739834; Name=CK739834; organism=Citrus sinensis; type=EST; length=229bp
CCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAA
CCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATG
TTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGT
CAAGTTCGGTGAGGCCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGC
CGAGGGCGGGCTTGACTACTTGGGGAACC
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