CK739834

Overview
NameCK739834
Unique NameCK739834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.020e-29
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEA
Sbjct:   64 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEA 118

HSP 2 Score: 29.261 bits (64), Expect = 1.020e-29
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  119 VWFKAGSQIFSEGGLDYLG 137

HSP 3 Score: 24.2534 bits (51), Expect = 1.020e-29
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  129 SEGGLDYLGN 138
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.023e-29
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEA
Sbjct:   37 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEA 91

HSP 2 Score: 29.261 bits (64), Expect = 1.023e-29
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:   92 VWFKAGSQIFSEGGLDYLG 110

HSP 3 Score: 24.2534 bits (51), Expect = 1.023e-29
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  102 SEGGLDYLGN 111
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.230e-29
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEA
Sbjct:   78 PGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEA 132

HSP 2 Score: 29.261 bits (64), Expect = 2.230e-29
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  133 VWFKAGSQIFSEGGLDYLG 151

HSP 3 Score: 24.2534 bits (51), Expect = 2.230e-29
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  143 SEGGLDYLGN 152
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.231e-29
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEA
Sbjct:   77 PGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEA 131

HSP 2 Score: 29.261 bits (64), Expect = 2.231e-29
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  132 VWFKAGSQIFSEGGLDYLG 150

HSP 3 Score: 24.2534 bits (51), Expect = 2.231e-29
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  142 SEGGLDYLGN 151
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.898e-29
Identity = 50/55 (90.91%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEA
Sbjct:   74 PGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEA 128

HSP 2 Score: 29.261 bits (64), Expect = 2.898e-29
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  129 VWFKAGSQIFSEGGLDYLG 147

HSP 3 Score: 24.2534 bits (51), Expect = 2.898e-29
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  139 SEGGLDYLGN 148
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.906e-29
Identity = 50/55 (90.91%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEA
Sbjct:   46 PGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEA 100

HSP 2 Score: 29.261 bits (64), Expect = 2.906e-29
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  101 VWFKAGSQIFSEGGLDYLG 119

HSP 3 Score: 24.2534 bits (51), Expect = 2.906e-29
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  111 SEGGLDYLGN 120
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.761e-29
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   75 PGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 129

HSP 2 Score: 28.4906 bits (62), Expect = 3.761e-29
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  130 VWFKAGSQIFSDGGLDYLG 148

HSP 3 Score: 23.0978 bits (48), Expect = 3.761e-29
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            ++GGLDYLGN
Sbjct:  140 SDGGLDYLGN 149
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.761e-29
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   75 PGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 129

HSP 2 Score: 28.4906 bits (62), Expect = 3.761e-29
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  130 VWFKAGSQIFSDGGLDYLG 148

HSP 3 Score: 23.0978 bits (48), Expect = 3.761e-29
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            ++GGLDYLGN
Sbjct:  140 SDGGLDYLGN 149
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.762e-29
Identity = 50/55 (90.91%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEA
Sbjct:   72 PGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEA 126

HSP 2 Score: 30.4166 bits (67), Expect = 3.762e-29
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAGAQIFS G    LG
Sbjct:  127 VWFKAGAQIFSEGGLDYLG 145

HSP 3 Score: 24.2534 bits (51), Expect = 3.762e-29
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  137 SEGGLDYLGN 146
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.762e-29
Identity = 50/55 (90.91%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEA
Sbjct:   72 PGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEA 126

HSP 2 Score: 30.4166 bits (67), Expect = 3.762e-29
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAGAQIFS G    LG
Sbjct:  127 VWFKAGAQIFSEGGLDYLG 145

HSP 3 Score: 24.2534 bits (51), Expect = 3.762e-29
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  137 SEGGLDYLGN 146
The following BLAST results are available for this feature:
BLAST of CK739834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB21_CUCSA1.020e-2996.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PEA1.023e-2996.36Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB22_PEA2.230e-2994.55Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB28_PEA2.231e-2994.55Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB26_PETSP2.898e-2990.91Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC2.906e-2990.91Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_ARATH3.761e-2996.36Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH3.761e-2996.36Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_ORYSJ3.762e-2990.91Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI3.762e-2990.91Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6224 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739834 ID=CK739834; Name=CK739834; organism=Citrus sinensis; type=EST; length=229bp
CCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAA
CCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATG
TTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGT
CAAGTTCGGTGAGGCCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGC
CGAGGGCGGGCTTGACTACTTGGGGAACC
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