CK739834

Overview
NameCK739834
Unique NameCK739834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.063e-25
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEA
Sbjct:   62 PGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEA 116

HSP 2 Score: 30.4166 bits (67), Expect = 2.063e-25
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAGAQIFS G    LG
Sbjct:  117 VWFKAGAQIFSEGGLDYLG 135

HSP 3 Score: 24.2534 bits (51), Expect = 2.063e-25
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  127 SEGGLDYLGN 136
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.327e-23
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGE 163
            PGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E
Sbjct:   75 PGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKE 129

HSP 2 Score: 31.9574 bits (71), Expect = 1.327e-23
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 3 
Query:  165 PVWFKAGAQIFSRGRA*LLG 224
            PVWFKAG+QIFS G    LG
Sbjct:  130 PVWFKAGSQIFSEGGLDYLG 149

HSP 3 Score: 24.2534 bits (51), Expect = 1.327e-23
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  141 SEGGLDYLGN 150
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.724e-23
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 2 
Query:   29 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            GLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   74 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 119

HSP 2 Score: 29.261 bits (64), Expect = 1.724e-23
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  120 VWFKAGSQIFSEGGLDYLG 138

HSP 3 Score: 24.2534 bits (51), Expect = 1.724e-23
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  130 SEGGLDYLGN 139
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 8.194e-23
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEA
Sbjct:   78 PGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEA 132

HSP 2 Score: 30.4166 bits (67), Expect = 8.194e-23
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAGAQIFS G    LG
Sbjct:  133 VWFKAGAQIFSEGGLDYLG 151

HSP 3 Score: 24.2534 bits (51), Expect = 8.194e-23
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  143 SEGGLDYLGN 152
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.063e-22
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 142
            PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +
Sbjct:   72 PGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEK 118

HSP 2 Score: 31.187 bits (69), Expect = 1.063e-22
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 3 
Query:  165 PVWFKAGAQIFSRGRA*LLG 224
            PVWFKAG+QIFS G    LG
Sbjct:  127 PVWFKAGSQIFSDGGLDYLG 146

HSP 3 Score: 23.0978 bits (48), Expect = 1.063e-22
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            ++GGLDYLGN
Sbjct:  138 SDGGLDYLGN 147
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.406e-21
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGE 163
            PGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE
Sbjct:   59 PGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGE 113

HSP 2 Score: 31.187 bits (69), Expect = 2.406e-21
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 3 
Query:  165 PVWFKAGAQIFSRGRA*LLG 224
            PVWFKAGAQIF+ G    LG
Sbjct:  114 PVWFKAGAQIFADGGLNYLG 133

HSP 3 Score: 22.3274 bits (46), Expect = 2.406e-21
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            A+GGL+YLGN
Sbjct:  125 ADGGLNYLGN 134
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.854e-19
Identity = 48/72 (66.67%), Postives = 53/72 (73.61%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGE-------ARVVQGGGPD 193
            PGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE       A++   GG D
Sbjct:   64 PGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLD 135

HSP 2 Score: 22.3274 bits (46), Expect = 3.854e-19
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLG+
Sbjct:  130 SEGGLDYLGS 139
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.521e-17
Identity = 45/76 (59.21%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEARVVQGGGPDLQPRAGLTTWG 226
            PGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+A +    G  +    GL   G
Sbjct:   81 PGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLG 156

HSP 2 Score: 20.7866 bits (42), Expect = 1.521e-17
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:  202 EGGLDYLGN 228
            +GGL+YLGN
Sbjct:  149 DGGLNYLGN 157
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.995e-11
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 151
            PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+
Sbjct:   83 PGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI 132
The following BLAST results are available for this feature:
BLAST of CK739834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB2_CHLRE2.063e-2581.82Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_HORVU1.327e-2380.00Chlorophyll a-b binding protein of LHCII type III,... [more]
CB22_SOYBN1.724e-2397.83Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_MALDO8.194e-2380.00Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB23_SOLLC1.063e-2285.11Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_DUNTE2.406e-2172.73Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO3.854e-1966.67Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA1.521e-1759.21Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB12_SOLLC1.995e-1154.00Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6224 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739834 ID=CK739834; Name=CK739834; organism=Citrus sinensis; type=EST; length=229bp
CCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAA
CCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATG
TTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGT
CAAGTTCGGTGAGGCCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGC
CGAGGGCGGGCTTGACTACTTGGGGAACC
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