CK739882

Overview
NameCK739882
Unique NameCK739882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length354
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_AERPE (30S ribosomal protein S9P OS=Aeropyrum pernix GN=rps9p PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.432e-17
Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 3
Query:   12 GRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQ---------KYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            GRG + ING P+E+   E+ R K  EP+L+ G    + VD+R+RV+GGG   Q  A+R +IA+ LV F++         + +D+ S ++++   + +DRT+LV DPRR EP+K+    AR R+
Sbjct:   25 GRGRVWINGVPLEIYPIEMARIKMMEPLLIAGEGVRSLVDIRVRVEGGGVMGQADAVRMAIARGLVEFFRCEESDDELCRMMDKIS-RDLRTAFLEHDRTMLVGDPRRTEPEKYMRYSARRRW 146          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_HALMA (30S ribosomal protein S9P OS=Haloarcula marismortui GN=rps9p PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.177e-17
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            + G G ++I+  P+ELV+PE+ + K  EP  +        VD+ + V+GGG   Q  A R +IA+ L       VD  +  E++D  + +DR+LLV D R+ EPKK+GG GARAR+
Sbjct:   19 REGEGRVRIDSQPVELVDPELAQLKMLEPFRIAEDDLRGEVDVEVSVEGGGVMGQADAARTAIARGL-------VDHTNDAELRDAFMEFDRSLLVNDVRQSEPKKWGGPGARARY 127          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_METMA (30S ribosomal protein S9P OS=Methanosarcina mazei GN=rps9p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.149e-17
Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = 3
Query:    9 RGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            +G G ++IN  P+EL  PE+   K  EP+L+ G+   +G+D+ + V+GGG   Q  A+R ++A+ +V +        +   I+D    YDR LLV+D R+ E K FGG GAR+++
Sbjct:   22 KGTGKVRINKIPLELYTPELAMMKISEPLLIAGKDVVSGLDINVDVRGGGIVGQANAVRTAVARGIVEW-------TNDTTIRDNFAAYDRNLLVSDSRQKEAKNFGGPGARSKY 129          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_METAC (30S ribosomal protein S9P OS=Methanosarcina acetivorans GN=rps9p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.149e-17
Identity = 44/115 (38.26%), Postives = 68/115 (59.13%), Query Frame = 3
Query:    9 RGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            +G G ++IN  P+EL  PE+   K  EP+L+ G    +G+D+ + V+GGG   Q  A+R ++A+ +V +        +   I+D    YDR LLV+D R+ E K FGG GARA++
Sbjct:   22 KGTGKVRINKIPLELYTPELAMMKISEPLLIAGNDVVSGLDINVDVRGGGIIGQANAVRTAVARGIVEW-------TNDTAIRDNFAAYDRNLLVSDSRQKESKNFGGPGARAKY 129          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_METTP (30S ribosomal protein S9P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps9p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.419e-17
Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            K G+G I+IN  P+E++EP + R K  EP+++     F+ VD+ + V GGG   Q  A+R ++A+ ++ +            +K+    YDR LLV+D R+ E KKFGG GARA++
Sbjct:   20 KEGKGRIRINNVPLEIIEPALARMKMMEPVIMAAE-AFSSVDVDVSVMGGGVMGQADAVRTALARGILEW-------TGDAALKEAYAEYDRNLLVSDHRQKEKKKFGGLGARAKY 127          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_METM7 (30S ribosomal protein S9P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps9p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.419e-17
Identity = 50/117 (42.74%), Postives = 71/117 (60.68%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARAR 350
            K G G I+IN  P+EL+EP+ ++ K  EP++L G    + +D+ I VKGGG  SQ+ A R ++ KA+V F         K E+K+  + YDRTLLV+D RR EP K     +G RA+
Sbjct:   20 KEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EALSNIDVDIDVKGGGIVSQMDATRTALGKAIVEF-------TGKMELKEKFLSYDRTLLVSDARRTEPHKPSKSSKGPRAK 128          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_METM5 (30S ribosomal protein S9P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps9p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.077e-17
Identity = 50/117 (42.74%), Postives = 71/117 (60.68%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARAR 350
            K G G I+IN  P+EL+EP+ ++ K  EP++L G    + +D+ I VKGGG  SQ+ A R ++ KA+V F         K E+K+  + YDRTLLV+D RR EP K     +G RA+
Sbjct:   20 KEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EALSDIDVDIDVKGGGIVSQMDATRTALGKAIVEF-------TGKMELKEKFLSYDRTLLVSDARRTEPHKPSKSSKGPRAK 128          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_DESK1 (30S ribosomal protein S9P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps9p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.077e-17
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353
            K G G + IN  P+E ++ E+ + K  EP+LL+G      VD+R+ V GGG+ SQ  A+R +IA+ LV F+       +  E+K +   YDR +L  DPR+ EPKK+G   AR R+
Sbjct:   28 KPGIGRVWINNVPVEFIQFELAKMKILEPLLLIG-DLAKTVDIRVNVHGGGYMSQAEAVRIAIARGLVEFF-------NSDEVKSLFKEYDRHMLSGDPRQTEPKKWGRYSARRRW 135          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_ARCFU (30S ribosomal protein S9P OS=Archaeoglobus fulgidus GN=rps9p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.077e-17
Identity = 48/115 (41.74%), Postives = 69/115 (60.00%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARAR 350
            K G+G ++IN  P+E+ +PE+ R K  EP L++ +     VD+ ++  GGG  +Q  A R +IA+AL+ F          +E++   + YDRTLLV D RR  PK  GGRGARAR
Sbjct:   23 KPGKGRVRINSVPVEIHQPELARMKIMEP-LIIAKELAEKVDIEVKTWGGGFMAQAEAARTAIARALLEF-------SGDEELRKAFLEYDRTLLVNDVRRKLPKIQGGRGARAR 129          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_PYRKO (30S ribosomal protein S9P OS=Pyrococcus kodakaraensis GN=rps9p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.243e-17
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK 323
            + G+G ++IN  P+E++EPEI RF   EP++L G    + VD+ ++V+GGG   Q  A R +IA+ALV +        +   +K+  ++YDRT+LV D RR EP K
Sbjct:   20 REGKGRVRINHKPVEIIEPEIARFTIMEPLILAGEEIVSRVDIDVKVEGGGFMGQAEAARVAIARALVEW-------TNDMNLKEKFMKYDRTMLVGDSRRTEPHK 118          
The following BLAST results are available for this feature:
BLAST of CK739882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RS9_AERPE2.432e-1739.0230S ribosomal protein S9P OS=Aeropyrum pernix GN=r... [more]
RS9_HALMA3.177e-1739.6630S ribosomal protein S9P OS=Haloarcula marismortu... [more]
RS9_METMA4.149e-1737.3930S ribosomal protein S9P OS=Methanosarcina mazei ... [more]
RS9_METAC4.149e-1738.2630S ribosomal protein S9P OS=Methanosarcina acetiv... [more]
RS9_METTP5.419e-1737.9330S ribosomal protein S9P OS=Methanosaeta thermoph... [more]
RS9_METM75.419e-1742.7430S ribosomal protein S9P OS=Methanococcus maripal... [more]
RS9_METM57.077e-1742.7430S ribosomal protein S9P OS=Methanococcus maripal... [more]
RS9_DESK17.077e-1740.5230S ribosomal protein S9P OS=Desulfurococcus kamch... [more]
RS9_ARCFU7.077e-1741.7430S ribosomal protein S9P OS=Archaeoglobus fulgidu... [more]
RS9_PYRKO9.243e-1740.5730S ribosomal protein S9P OS=Pyrococcus kodakaraen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6274 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739882 ID=CK739882; Name=CK739882; organism=Citrus sinensis; type=EST; length=354bp
ACTGCAAGCGCGGTCGTGGGTTGATCAAGATTAACGGCTGCCCGATCGAG
TTAGTCGAGCCGGAGATCCTCCGCTTCAAGGCATACGAGCCAATTCTCTT
GCTCGGGCGACACCGATTCGCCGGCGTGGACATGAGAATCCGCGTGAAGG
GCGGGGGACACACGTCGCAGATCTACGCCATCCGTCAGAGCATCGCCAAG
GCTCTCGTGGCTTTCTACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGA
GATTAAGGACATTCTCGTTAGGTACGACAGGACCCTGCTTGTGGCAGACC
CACGCCGGTGCGAGCCCAAGAAGTTCGGTGGACGTGGCGCTAGGGCTCGG
TTCC
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