CK739882

Overview
NameCK739882
Unique NameCK739882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length354
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_METVS (30S ribosomal protein S9P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps9p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.243e-17
Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 3
Query:   12 GRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARAR 350
            G G I+IN  P+EL+EP+ ++ K  EP++L G      +D+ + VKGGG  SQ+ A R ++ KA++ F         K E+K++ + YDRTLLV+D RR EP K     +G RAR
Sbjct:   22 GSGKIRINKKPLELMEPKYIKMKLMEPVILAGEI-LGSIDVDVDVKGGGTVSQMDAARTALGKAIIEF-------TGKMELKEMFLSYDRTLLVSDARRTEPHKPSKSSKGPRAR 128          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_METMP (30S ribosomal protein S9P OS=Methanococcus maripaludis GN=rps9p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.207e-16
Identity = 49/117 (41.88%), Postives = 71/117 (60.68%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARAR 350
            K G G I+IN  P+EL+EP+ ++ K  EP++L G    + +D+ I VKGGG  SQ+ A R ++ KA+V F         K ++K+  + YDRTLLV+D RR EP K     +G RA+
Sbjct:   20 KEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EALSNIDVDIDVKGGGIVSQMDATRTALGKAIVEF-------TGKMDLKEKFLSYDRTLLVSDARRTEPHKPSKSSKGPRAK 128          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_META3 (30S ribosomal protein S9P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps9p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.991e-16
Identity = 47/106 (44.34%), Postives = 63/106 (59.43%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK 323
            K G+G I+IN  PIE+VEP+ +  K  EPI+L G     G+D+ I V GGG   Q+ A R ++ KA+V F           E+KD  V YDRT+L++D RR EP K
Sbjct:   20 KEGKGRIRINKKPIEIVEPKYINAKLMEPIILAG-DVVDGIDIDITVNGGGIVGQMDAARTALGKAIVEF-------TGDMELKDRFVHYDRTILISDARRTEPHK 117          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_THESM (30S ribosomal protein S9P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps9p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.824e-16
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK 323
            K G G +++N  P+E++EPEI RF   EP+++ G      VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV D RR EP K
Sbjct:   28 KEGNGRVRVNYKPVEILEPEIARFTIMEPLVIAGEEILGKVDVDVKVEGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFMKYDRTMLVGDSRRTEPHK 126          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_PICTO (30S ribosomal protein S9P OS=Picrophilus torridus GN=rps9p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.743e-15
Identity = 51/115 (44.35%), Postives = 70/115 (60.87%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARAR 350
            ++G G   ING PIEL   EILR K  EPI +LG  R   +D+ + V GGG+T Q  A R ++AKA++ +++   D   + EI+     YDR++LV D RR  PKK  G GARA+
Sbjct:   21 RKGSGKFLINGYPIELYPIEILREKMLEPIRILG-DRSKEIDIDVNVHGGGNTGQADATRTAMAKAIIEYFK---DSDLEAEIR----AYDRSMLVNDVRRKMPKKPMGYGARAK 127          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_PYRAE (30S ribosomal protein S9P OS=Pyrobaculum aerophilum GN=rps9p PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.277e-15
Identity = 47/115 (40.87%), Postives = 69/115 (60.00%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARAR 350
            K G G ++ING P+EL   E+ R K  EP++L G      VD+ + V GGG+  Q  A+R ++A+ LVAF+Q        +E+K++  RYD  +L  DPRR E KK G + AR++
Sbjct:   30 KPGIGRVRINGYPLELWPIEMARIKMSEPLILAGELA-KKVDIDVNVSGGGYMGQAVAVRIAMARGLVAFFQ-------SQELKELYERYDPYMLKGDPRRTEHKKPGIKHARSK 136          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_SULTO (30S ribosomal protein S9P OS=Sulfolobus tokodaii GN=rps9p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.624e-15
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 3
Query:   12 GRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR 344
            G+G + +N  P+E++  E++R K  EP+LL G    + +D +I V+GGG   Q  A R ++A+ALV F          KE+++I   YDRT+L  DPR+ E +K+    AR
Sbjct:   26 GKGRVFVNDIPLEIIPMEVVRMKIMEPLLLAGEKISSSIDAKIYVEGGGVMGQADAARMALARALVKF-------TGSKELEEIYKVYDRTMLAGDPRQTESEKWMRYSAR 129          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_SULAC (30S ribosomal protein S9P OS=Sulfolobus acidocaldarius GN=rps9p PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.517e-14
Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 3
Query:    6 KRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR 344
            K G G + +N  PIE++  E++R+K  EP++L G    + ++ RI  +GGG   Q  A R ++A+ALV F        + KE+ +I   YDRT+L  DPR+ E +K+    AR
Sbjct:   25 KPGNGKVFVNDIPIEIIPIEVVRYKIMEPLVLAGDKITSSIEARIYTQGGGIMGQADAARMALARALVKF-------TNSKELVEIYKSYDRTMLAGDPRQTESEKWMRYSAR 130          
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS9_SULSO (30S ribosomal protein S9P OS=Sulfolobus solfataricus GN=rps9p PE=3 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.249e-13
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 3
Query:   12 GRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR 344
            G+G + +N  PIEL+  E++R K  EP+LL G    + +D +I   GGG   Q  A R ++A+ALV F          KE++ I   YDRT+L  DPR+ E +K+    AR
Sbjct:   26 GKGRVFVNNVPIELIPIEMVRLKIMEPLLLAGNDIRSKIDAKIITYGGGIMGQADAARMALARALVKF-------TGSKELEKIYRAYDRTMLAGDPRQTESEKWMRYSAR 129          
The following BLAST results are available for this feature:
BLAST of CK739882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RS9_METVS9.243e-1741.7430S ribosomal protein S9P OS=Methanococcus vanniel... [more]
RS9_METMP1.207e-1641.8830S ribosomal protein S9P OS=Methanococcus maripal... [more]
RS9_META35.991e-1644.3430S ribosomal protein S9P OS=Methanococcus aeolicu... [more]
RS9_THESM7.824e-1639.6230S ribosomal protein S9P OS=Thermococcus sibiricu... [more]
RS9_PICTO1.743e-1544.3530S ribosomal protein S9P OS=Picrophilus torridus ... [more]
RS9_PYRAE2.277e-1540.8730S ribosomal protein S9P OS=Pyrobaculum aerophilu... [more]
RS9_SULTO6.624e-1537.8430S ribosomal protein S9P OS=Sulfolobus tokodaii G... [more]
RS9_SULAC2.517e-1437.1730S ribosomal protein S9P OS=Sulfolobus acidocalda... [more]
RS9_SULSO1.249e-1338.7430S ribosomal protein S9P OS=Sulfolobus solfataric... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6274 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739882 ID=CK739882; Name=CK739882; organism=Citrus sinensis; type=EST; length=354bp
ACTGCAAGCGCGGTCGTGGGTTGATCAAGATTAACGGCTGCCCGATCGAG
TTAGTCGAGCCGGAGATCCTCCGCTTCAAGGCATACGAGCCAATTCTCTT
GCTCGGGCGACACCGATTCGCCGGCGTGGACATGAGAATCCGCGTGAAGG
GCGGGGGACACACGTCGCAGATCTACGCCATCCGTCAGAGCATCGCCAAG
GCTCTCGTGGCTTTCTACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGA
GATTAAGGACATTCTCGTTAGGTACGACAGGACCCTGCTTGTGGCAGACC
CACGCCGGTGCGAGCCCAAGAAGTTCGGTGGACGTGGCGCTAGGGCTCGG
TTCC
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