CK739901

Overview
NameCK739901
Unique NameCK739901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length290
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK739901 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 3.481e-11
Identity = 20/39 (51.28%), Postives = 31/39 (79.49%), Query Frame = 3 
Query:   84 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP 200
            ++KRI KEL D+  DPP +CSAGP  ++++ W++TI+GP
Sbjct:   48 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGP 86

HSP 2 Score: 34.6538 bits (78), Expect = 3.481e-11
Identity = 14/25 (56.00%), Postives = 17/25 (68.00%), Query Frame = 2 
Query:  215 YAGGVFLVTIHFPPDYPFQAPKGCF 289
            Y GGVF + I F P+YPF+ PK  F
Sbjct:   91 YEGGVFFLDITFTPEYPFKPPKVTF 115
The following BLAST results are available for this feature:
BLAST of CK739901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
UB2E1_HUMAN3.481e-1151.28Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6293 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739901 ID=CK739901; Name=CK739901; organism=Citrus sinensis; type=EST; length=290bp
CGCTCTCCGATCCTGTTCTCTGCCGCGCAAGGTCTTAAGGTTCGTTGTAG
TTTCAAATTTTAATAATCCCCTGAAGAGTCATGGCTTCAAAGCGTATTTT
GAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTG
GCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGGCCC
TTCTGATAGCCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTT
CCTCCTGATTATCCCTTTCAAGCCCCCAAAGGTTGCTTTT
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