CK739921

Overview
NameCK739921
Unique NameCK739921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length306
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.975e-13
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            +DQS+QSFLDDDQ+  G+VLTC AYPTSDVTIETHKEE+L
Sbjct:   58 IDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDL 97          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.042e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 126
            VDQS+ SFLDDDQ+ EGFVLTC AYP S+VTIETHKE++L G
Sbjct:   56 VDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDLVG 97          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.042e-12
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+QSFLDDDQ+  G+VLTCAAYP++DVTIETHKEEEL
Sbjct:  105 VDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.042e-12
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+QSFLDDDQ+  G+VLTC AYPTSD TIETHKEEEL
Sbjct:   59 VDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEEL 98          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.042e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 126
            VDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEE+L G
Sbjct:   56 VDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEDLTG 97          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.360e-12
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 126
            VDQS+ SFLDDDQ+G GFVLTC AYP S+VTIETHKEE L G
Sbjct:   56 VDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEALVG 97          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.360e-12
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+QSFLDD+Q+ EG+VLTC AYP SDVTIETHKEEEL
Sbjct:   56 VDQSDQSFLDDEQIEEGWVLTCVAYPKSDVTIETHKEEEL 95          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.360e-12
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            +DQS+QSFLDD+QM EG+VLTC AYPTSDV IETHKEE +
Sbjct:  108 IDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.360e-12
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+QSFLDDDQ+  G+VLTC AYPTSDVTI+THKEE+L
Sbjct:   59 VDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDL 98          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.320e-12
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+QSFLDDDQ+  G+VLTC AYPTSD TIETHKEE+L
Sbjct:   57 VDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
The following BLAST results are available for this feature:
BLAST of CK739921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FER1_APHFL7.975e-1380.00Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]
FER_SOLLY1.042e-1276.19Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_SILPR1.042e-1282.50Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER_CHLFR1.042e-1282.50Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
FER1_HYONI1.042e-1276.19Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]
FER_SOLLS1.360e-1278.57Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER_SAMNI1.360e-1282.50Ferredoxin OS=Sambucus nigra PE=1 SV=1[more]
FER1_ARATH1.360e-1277.50Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER1_ANAVT1.360e-1280.00Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER_SYNY42.320e-1280.00Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6313 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739921 ID=CK739921; Name=CK739921; organism=Citrus sinensis; type=EST; length=306bp
GTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATGGGAGAAGG
TTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGA
CTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATCTCA
TTATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAATGCT
TTGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTCTTTA
TTTCTTGGTGCAAAGAAGTTGTAATTGCACCGGCCATGAATGCGCATCGT
ACCTAG
back to top