CK739960

Overview
NameCK739960
Unique NameCK739960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length353
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK739960 vs. ExPASy Swiss-Prot
Match: CEN_ANTMA (Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.130e-14
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 3 
Query:  102 SMEPLVVGRVIGDVVDMFTPATEMTVHYGT----KQVANGCEIKPSASADKPSVQIHAPTPASSNLYTLVMVDPDAPSPSEPRYREWL 353
            S +PLV+GRVIGDVVD FT   +M+V Y +    K V NG E+ PSA    P V++H     S   +TL+M DPD P PS+P  RE L
Sbjct:    6 SSDPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMRS--FFTLIMTDPDVPGPSDPYLREHL 91
The following BLAST results are available for this feature:
BLAST of CK739960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CEN_ANTMA1.130e-1448.86Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6782 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739960 ID=CK739960; Name=CK739960; organism=Citrus sinensis; type=EST; length=353bp
ACACATTCCATTTTATTTCTGGGAGTCCAGGGTGATCGGTTTGAAATTGA
AGAGAAAAGAAATTACAAGTCACAAGAAAGAAGCACGTCGACATGGCGCG
GTCTATGGAGCCACTGGTTGTTGGGAGAGTGATTGGAGATGTAGTTGACA
TGTTCACTCCAGCCACTGAAATGACGGTCCATTATGGGACTAAACAGGTT
GCTAACGGCTGTGAGATCAAGCCCTCTGCTTCTGCTGACAAGCCCAGCGT
CCAAATTCATGCTCCTACTCCTGCCTCTTCCAATCTCTACACACTTGTTA
TGGTGGATCCCGATGCTCCAAGTCCGAGCGAACCCAGATACAGAGAGTGG
CTC
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