CK739974

Overview
NameCK739974
Unique NameCK739974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length409
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.963e-43
Identity = 84/115 (73.04%), Postives = 95/115 (82.61%), Query Frame = 2
Query:   71 HHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA-------CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            +  KDY DPPPAPLID  EL  WS YRA IAEF+ATLLFLY++V T+IG+K+QSD        C GVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSL+RA+
Sbjct:   14 YSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRAL 128          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.372e-43
Identity = 84/113 (74.34%), Postives = 95/113 (84.07%), Query Frame = 2
Query:   77 GKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSD------ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVA 397
            GKDY+DPPP    ++ ELK WSFYRA+IAEF+ATLLFLYV+V TVIG K Q+D      AC  VGLLGI+WAFGGMIF+LVYCTAGISGGHINPAVTFGLFLA KVSL+RAV+
Sbjct:   14 GKDYLDPPPVKTFEVRELKKWSFYRAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVS 126          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.464e-40
Identity = 77/105 (73.33%), Postives = 87/105 (82.86%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY +PPPAPL +  ELK WSFYRA IAEFVAT LFLY+++ TV+G  K S  C  VG+ GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+
Sbjct:   32 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAI 136          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.910e-40
Identity = 77/105 (73.33%), Postives = 87/105 (82.86%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY +PPPAPL +  EL  WSFYRA IAEF+AT LFLY++V TV+G K+  + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV
Sbjct:   30 KDYKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAV 134          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.910e-40
Identity = 77/105 (73.33%), Postives = 87/105 (82.86%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY +PPPAPL +  ELK WSFYRA IAEFVAT LFLY++V TV+G  K +  C  VG+ GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+
Sbjct:   35 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAI 139          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 7.718e-40
Identity = 77/105 (73.33%), Postives = 87/105 (82.86%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY +PPPAP  +  ELK WSFYRA IAEF+AT LFLYV+V TV+G K+  + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+
Sbjct:   30 KDYKEPPPAPFFEPGELKSWSFYRAGIAEFIATFLFLYVTVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAL 134          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.317e-39
Identity = 75/105 (71.43%), Postives = 86/105 (81.90%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY +PPPAPL +  EL  WSFYRA IAEF+AT LFLY+++ TV+G K+    C  VG+ G+AWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV
Sbjct:   30 KDYKEPPPAPLFEPGELSSWSFYRAGIAEFMATFLFLYITILTVMGLKRSDSLCSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAV 134          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.317e-39
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY +PPPAPL +  EL  WSFYRA IAEFVAT LFLY+S+ TV+G  K S  C  VG+ GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+
Sbjct:   31 KDYKEPPPAPLFEAEELTSWSFYRAGIAEFVATFLFLYISILTVMGVSKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAL 135          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.317e-39
Identity = 76/105 (72.38%), Postives = 87/105 (82.86%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY +PPPAPL +  ELK WSFYRA IAEFVAT LFLY+++ TV+G  K +  C  VG+ GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+
Sbjct:   32 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAL 136          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.719e-39
Identity = 76/105 (72.38%), Postives = 86/105 (81.90%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY +PPPAP  +  EL  WSFYRA IAEF+AT LFLY++V TV+G K+  + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV
Sbjct:   29 KDYKEPPPAPFFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAV 133          
The following BLAST results are available for this feature:
BLAST of CK739974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PIP27_MAIZE1.963e-4373.04Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP26_ARATH4.372e-4374.34Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP11_ORYSJ3.464e-4073.33Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP14_ARATH5.910e-4073.33Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP13_MAIZE5.910e-4073.33Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP15_ARATH7.718e-4073.33Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP1_SOLLC1.317e-3971.43Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP15_MAIZE1.317e-3973.33Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP12_MAIZE1.317e-3972.38Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_ARATH1.719e-3972.38Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6796 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739974 ID=CK739974; Name=CK739974; organism=Citrus sinensis; type=EST; length=409bp
AGAAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAG
AAGGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCACCA
CCAGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAG
AGCTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTG
TTGCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTT
GGCCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGT
TTACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGT
TTGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTTA
CATGGTGGC
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