CK739974

Overview
NameCK739974
Unique NameCK739974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length409
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 2.246e-39
Identity = 76/105 (72.38%), Postives = 88/105 (83.81%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY +PPPAPL + +EL  WSFYRA IAEF+AT LFLY++V TV+G  ++S  C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+
Sbjct:   32 KDYQEPPPAPLFEPSELTSWSFYRAGIAEFIATFLFLYITVLTVMGVVRESSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAI 136          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.246e-39
Identity = 76/105 (72.38%), Postives = 87/105 (82.86%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY +PPPAPL +  EL  WSF+RA IAEF+AT LFLY++V TV+G K+  + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV
Sbjct:   29 KDYKEPPPAPLFEPGELASWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAV 133          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.933e-39
Identity = 77/106 (72.64%), Postives = 86/106 (81.13%), Query Frame = 2
Query:   77 GKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            G+DY +PP APL + +EL  WSFYRA IAEFVAT LFLYV+V TV+G  K    CG VG+ GIAWAFGGMIF LVYCTAG+SGGHINPAVTFGL LARK+SL RAV
Sbjct:   36 GRDYSEPPAAPLFEASELSSWSFYRAGIAEFVATFLFLYVTVLTVMGVSKSPSKCGTVGIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAV 141          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 5.003e-39
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 2
Query:   86 YVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQS---DACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            Y DPPPAPL+D +EL  WS YRALIAEF+ATL+FLYVS+ATVIG+K Q    DAC GVG LG+AW+FG  IFVLVYCT G+SGGHINPAVT GLF  RK+SL+R V
Sbjct:   23 YWDPPPAPLLDTSELGKWSLYRALIAEFMATLIFLYVSIATVIGYKNQRATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTV 128          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 8.533e-39
Identity = 75/105 (71.43%), Postives = 86/105 (81.90%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY +PPPAPL +  ELK WSFYRA IAEF+AT LFLY++V TV+G    +  C  VG+ GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+
Sbjct:   31 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAL 135          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.114e-38
Identity = 74/105 (70.48%), Postives = 86/105 (81.90%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY +PPPAP  +  EL  WSF+RA IAEF+AT LFLY++V TV+G K+  + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+
Sbjct:   29 KDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAL 133          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.114e-38
Identity = 74/105 (70.48%), Postives = 86/105 (81.90%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY +PPPAP  +  EL  WSF+RA IAEF+AT LFLY++V TV+G K+  + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+
Sbjct:   29 KDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAL 133          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 1.901e-38
Identity = 75/105 (71.43%), Postives = 86/105 (81.90%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY +PP AP+ ++ EL  WSFYRA IAEFVAT LFLY+S+ TV+G  K +  C  VG+ GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV
Sbjct:   31 KDYREPPAAPVFEVEELTSWSFYRAGIAEFVATFLFLYISILTVMGVNKSASKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAV 135          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.609e-37
Identity = 76/104 (73.08%), Postives = 86/104 (82.69%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRA 391
            KDY DPPPAPL+D  EL  WS YRA IAEF ATLL + +SV+TVIG K+QS   GG G+LGIAWAFGG+IFVLVYCTAGISGGH+NPAVTF + LAR+VSL RA
Sbjct:   12 KDYQDPPPAPLVDTGELGKWSLYRAAIAEFTATLLLVCISVSTVIGEKRQSGE-GGAGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRA 114          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.115e-37
Identity = 75/105 (71.43%), Postives = 84/105 (80.00%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY +PPPAPL +  ELK WSFYR  IAEFVAT LFLY+S+ TV+G  K +  C  VG+ GIAW+FGGMI  LVYCTAGIS GHINPAVTFGLFLARK+SL RAV
Sbjct:   31 KDYKEPPPAPLFEPGELKSWSFYRPGIAEFVATFLFLYISILTVMGVSKSTSKCATVGIQGIAWSFGGMILALVYCTAGIS-GHINPAVTFGLFLARKLSLTRAV 134          
The following BLAST results are available for this feature:
BLAST of CK739974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PIP2_PEA2.246e-3972.38Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP12_ARATH2.246e-3972.38Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP16_MAIZE2.933e-3972.64Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP27_ORYSJ5.003e-3971.70Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP12_ORYSJ8.533e-3971.43Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP11_VICFA1.114e-3870.48Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH1.114e-3870.48Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP13_ORYSJ1.901e-3871.43Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP28_ORYSJ1.609e-3773.08Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP11_MAIZE6.115e-3771.43Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6796 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739974 ID=CK739974; Name=CK739974; organism=Citrus sinensis; type=EST; length=409bp
AGAAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAG
AAGGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCACCA
CCAGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAG
AGCTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTG
TTGCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTT
GGCCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGT
TTACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGT
TTGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTTA
CATGGTGGC
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