CK740012

Overview
NameCK740012
Unique NameCK740012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length353
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.199e-40
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  191 PLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.045e-40
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   38 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.045e-40
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  189 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.045e-40
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  189 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.045e-40
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  188 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.671e-40
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  187 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.671e-40
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  187 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.671e-40
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            P+YPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  196 PIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.671e-40
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  187 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.671e-40
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  190 PLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268
The following BLAST results are available for this feature:
BLAST of CK740012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB22_PEA1.199e-4097.47Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB2D_SOLLC2.045e-4097.47Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB27_TOBAC2.045e-4097.47Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_PETSP2.045e-4097.47Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_TOBAC2.045e-4097.47Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2C_SOLLC2.671e-4097.47Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC2.671e-4097.47Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2B_PINSY2.671e-4096.20Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_SOLLC2.671e-4097.47Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB28_PEA2.671e-4096.20Chlorophyll a-b binding protein 8, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6506 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740012 ID=CK740012; Name=CK740012; organism=Citrus sinensis; type=EST; length=353bp
ACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGAC
CCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTT
GGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCA
AGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAAC
AATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGT
TGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTT
GTGAGCTCATGGAAGCCTTTAATTTGAGTTGCGATTATTTATAAAATGCT
TCA
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