CK740012

Overview
NameCK740012
Unique NameCK740012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length353
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.609e-37
Identity = 72/79 (91.14%), Postives = 76/79 (96.20%), Query Frame = 3
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  188 PLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.609e-37
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 3
Query:    6 LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            LYPGGSFDPL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   47 LYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.609e-37
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 3
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PL PGG+FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  188 PLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.791e-36
Identity = 69/78 (88.46%), Postives = 75/78 (96.15%), Query Frame = 3
Query:    6 LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  186 VYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.791e-36
Identity = 69/78 (88.46%), Postives = 75/78 (96.15%), Query Frame = 3
Query:    6 LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  186 VYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.791e-36
Identity = 68/79 (86.08%), Postives = 77/79 (97.47%), Query Frame = 3
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGG+FDPLGLADDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  187 PLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.762e-35
Identity = 69/78 (88.46%), Postives = 71/78 (91.03%), Query Frame = 3
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 236
            P+YPGGSFDPLGLADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  190 PIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.044e-33
Identity = 68/78 (87.18%), Postives = 69/78 (88.46%), Query Frame = 3
Query:    6 LYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 236
            LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  187 LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.677e-32
Identity = 67/78 (85.90%), Postives = 68/78 (87.18%), Query Frame = 3
Query:    6 LYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 236
            LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.566e-32
Identity = 65/77 (84.42%), Postives = 69/77 (89.61%), Query Frame = 3
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 233
            PLYPG SFDPLGLADDP+ FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  178 PLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
The following BLAST results are available for this feature:
BLAST of CK740012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB21_WHEAT3.609e-3791.14Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_RAPSA3.609e-3793.59Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_PINTH3.609e-3792.41Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_ORYSJ1.791e-3688.46Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.791e-3688.46Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA1.791e-3686.08Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_PHYPA5.762e-3588.46Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_SOLLC7.044e-3387.18Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU2.677e-3285.90Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLMO4.566e-3284.42Chlorophyll a-b binding protein of LHCII type I, c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6506 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740012 ID=CK740012; Name=CK740012; organism=Citrus sinensis; type=EST; length=353bp
ACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGAC
CCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTT
GGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCA
AGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAAC
AATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGT
TGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTT
GTGAGCTCATGGAAGCCTTTAATTTGAGTTGCGATTATTTATAAAATGCT
TCA
back to top