CK740012
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 2.266e-31 Identity = 62/77 (80.52%), Postives = 68/77 (88.31%), Query Frame = 3 Query: 3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 233 PLYPG +FDPLGLADDP+ FAELKVKEIKNGRLAMF+ GFFVQAIVTGKGP+ENL DHLA+P NNA+AYAT F P Sbjct: 196 PLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 2.959e-31 Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 3 Query: 3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 233 PLYPG SFDPLGLADDP+ FAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P NNA+A+AT F P Sbjct: 175 PLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 2.505e-30 Identity = 62/77 (80.52%), Postives = 66/77 (85.71%), Query Frame = 3 Query: 6 LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 236 LYPGG FDPLGLADDP+ FAELKVKEIKNGRLAMFS GFFVQAIVTGKGP++NL DHLADP N A+A AT F PG Sbjct: 176 LYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 7.543e-27 Identity = 62/78 (79.49%), Postives = 66/78 (84.62%), Query Frame = 3 Query: 3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 236 PLYPG SFD LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K LENLADHL VNNNA + TNFVPG Sbjct: 191 PLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.608e-23 Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 3 Query: 6 LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 203 L+PGG FDPLGLA DPE A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN Sbjct: 200 LHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 8.631e-23 Identity = 52/77 (67.53%), Postives = 57/77 (74.03%), Query Frame = 3 Query: 6 LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 233 LYPGG FDPLGLADDP+ F ELKVKEIKNGRLAM M GF+ QAIVTG+GP+EN HL DP +N A T F P Sbjct: 45 LYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.931e-20 Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 3 Query: 3 PLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 203 P YPGG F+PLG D ++ ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN Sbjct: 198 PAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 7.561e-19 Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 3 Query: 3 PLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 203 P YPGG F +PLG D ++ ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN Sbjct: 200 PAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.401e-18 Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 3 Query: 9 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 203 YPGG+FDPLG + DP F ELK+KEIKNGRLAM + GF V Q+ G GPLENLA HLADP +NN Sbjct: 167 YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.401e-18 Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 3 Query: 9 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 203 YPGG+FDPLG + DP F ELKVKEIKNGRLA+ ++ GF V Q+ G GPLENLA HLADP +NN Sbjct: 168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233 The following BLAST results are available for this feature:
BLAST of CK740012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >CK740012 ID=CK740012; Name=CK740012; organism=Citrus sinensis; type=EST; length=353bpback to top |