CK740042

Overview
NameCK740042
Unique NameCK740042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length399
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.349e-12
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            TTPDRQAACNCLK A G+I  +  N AA LP +C V IPYKIS ST+C+ +R
Sbjct:   64 TTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.349e-12
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 155
            TT DR+AACNCLK A   IRG+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   71 TTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.349e-12
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 155
            TT DR+A C+CLK A G +RGI PN A  LP +CGV IPYKIS ST+C+ +
Sbjct:   40 TTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.761e-12
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            TTPDRQAACNC+K A  +I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   65 TTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.300e-12
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            T  DR+ AC CLK A  +I+GI    AAGLP  CGV IPYKISPSTDCS V+
Sbjct:   63 TPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.300e-12
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            TT DR+AACNCLK + G+I G+KP   A LP +CGVR+PY IS ST+C+ +R
Sbjct:   66 TTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.004e-12
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 3
Query:   12 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            DR+ AC CLK A   I+GI    AAGLP  CGV IPYKISPSTDCS+V+
Sbjct:   66 DRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.125e-12
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 155
            TT DR+AACNCLK A   + G+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   69 TTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.742e-12
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            TT DRQAACNCLK A G I  + P  AA LP +C V IPYKIS +T+C+ ++
Sbjct:   66 TTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.742e-12
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 155
            TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   67 TTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
The following BLAST results are available for this feature:
BLAST of CK740042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NLTP_CICAR1.349e-1263.46Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP2_SORBI1.349e-1266.67Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_PHAAU1.349e-1260.78Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP5_LENCU1.761e-1261.54Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP2_SOLLC2.300e-1263.46Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP1_LENCU2.300e-1259.62Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP2_TOBAC3.004e-1265.31Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP_MAIZE5.125e-1262.75Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP3_LENCU8.742e-1257.69Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP2_ORYSI8.742e-1260.78Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6536 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740042 ID=CK740042; Name=CK740042; organism=Citrus sinensis; type=EST; length=399bp
GAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTAC
GGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCA
ATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTA
GGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGA
CTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGA
ACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTT
GCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTTTGAGTGAT
TAATTATAGTTATTTTGTGGTATTATCTTAAAAAAAAAAAAAAAAAAAA
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